View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20966_low_13 (Length: 349)
Name: NF20966_low_13
Description: NF20966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20966_low_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 35623540 - 35623205
Alignment:
| Q |
1 |
tttataaaaataaatggagaatatcatttagaaagagagatactcacaaatgaaaaatatcataaatggagatgatcttaactctcgttgaacaccgtta |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35623540 |
tttataaaaataaatggagaatgtcatttagaaagagagatactcacaaatgaaaaatatcataaatggagatgatcttaactctcgttgaacagtgtta |
35623441 |
T |
|
| Q |
101 |
agagaaataggnnnnnnnnn-actttcttcatttagttgtctgcctttatttcatgtattttatttctctataaaaatgtctttctttttagctgtactc |
199 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
35623440 |
agagaagtaggttttttttttactttcttcatttagttgtctgcctttatttcatgtattttattttactacaaaaatgtctttctttttagctgtactc |
35623341 |
T |
|
| Q |
200 |
tatagtcatcttgttgccnnnnnnnaagggatttcattgcctcttttcaatacattttagtagtaacgtaatgttataaaaatctgtactgtgtagtcgt |
299 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35623340 |
tatagtcatcttgttgcctttttttaagggatttcattgcctcttttcaatacattttagtagtaacgtaatgttataaaaatctgtactgtgtagtcgt |
35623241 |
T |
|
| Q |
300 |
ttggattttcttattaataattttattgatctttct |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
35623240 |
ttggattttcttattaataattttattgatctttct |
35623205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 43405730 - 43405696
Alignment:
| Q |
4 |
ataaaaataaatggagaatatcatttagaaagaga |
38 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
43405730 |
ataaaaataaatggagaatatcatttagaaagaga |
43405696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 26332950 - 26332992
Alignment:
| Q |
1 |
tttataaaaataaatggagaatatcatttagaaagagagatac |
43 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
26332950 |
tttataaaaataaatggagaatgtcatttagaaagagatatac |
26332992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 25442151 - 25442188
Alignment:
| Q |
1 |
tttataaaaataaatggagaatatcatttagaaagaga |
38 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
25442151 |
tttataaaaataaatggagtatgtcatttagaaagaga |
25442188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 2522590 - 2522541
Alignment:
| Q |
1 |
tttataaaaataaatggagaatatcatttagaaagagagatactcacaaa |
50 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||| |||||| |
|
|
| T |
2522590 |
tttataaaaataaatggagcatgccatttagaaagagagatacacacaaa |
2522541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 12949596 - 12949559
Alignment:
| Q |
1 |
tttataaaaataaatggagaatatcatttagaaagaga |
38 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
12949596 |
tttataaaaataaatggaggataccatttagaaagaga |
12949559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 11828878 - 11828915
Alignment:
| Q |
1 |
tttataaaaataaatggagaatatcatttagaaagaga |
38 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |
|
|
| T |
11828878 |
tttataaaaataaatggagaatgccatttagaaagaga |
11828915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 326
Target Start/End: Original strand, 29678868 - 29678905
Alignment:
| Q |
289 |
tgtgtagtcgtttggattttcttattaataattttatt |
326 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
29678868 |
tgtgtagtcgtttgggttttcttattaataattatatt |
29678905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 10778099 - 10778062
Alignment:
| Q |
1 |
tttataaaaataaatggagaatatcatttagaaagaga |
38 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
10778099 |
tttataaaaacaaatggagattatcatttagaaagaga |
10778062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University