View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20966_low_14 (Length: 348)
Name: NF20966_low_14
Description: NF20966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20966_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 42770390 - 42770722
Alignment:
| Q |
1 |
cgatgttattataaagataacggaagatgaaaggattaaagaaaaaacttattccatttcttcgtttcaattagttgtttttaatggaatctatttcttc |
100 |
Q |
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| T |
42770390 |
cgatgttattataaagataacggaagatgaaaggattaaagaagaaacttattccatttcttcgtttcaattagttgtttttaatggaatctatttcttc |
42770489 |
T |
|
| Q |
101 |
tttaatcctttgatcttctgttatctttatcataacatcgacacaaatatcatcgtcttccttatccgtctcgttgtcttcagctgtaccttctcctcct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
42770490 |
tttaatcctttgatcttctgttatctttatcataacatcgacacaaatatcatcgtcttccttatccgtctcgttgtattcagctgtaccttctcctcct |
42770589 |
T |
|
| Q |
201 |
agatttcaccttcagccttgtgcccttaaatgttctaaaaaattttctgctcctttctcatcttatttcgcagaactttgtggaaccgcctcaaagattt |
300 |
Q |
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||||||||||||||||| |||| |||| |||||||| ||||||||||| || |||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
42770590 |
agatttcaccttcagccatgtgaccttgaatgttcttaaaaattttcttctgctttctcatcttcagccgcagaaccttgtggaaccgcctcaaagattt |
42770689 |
T |
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| Q |
301 |
cacttttagccataccttatttaacattcttag |
333 |
Q |
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|||||| |||||||||||||||||||||||||| |
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| T |
42770690 |
cactttcagccataccttatttaacattcttag |
42770722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 94 - 147
Target Start/End: Complemental strand, 42770436 - 42770383
Alignment:
| Q |
94 |
tttcttctttaatcctttgatcttctgttatctttatcataacatcgacacaaa |
147 |
Q |
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|||||||||||||||||| |||||| ||||||||||| |||||||||||||||| |
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| T |
42770436 |
tttcttctttaatcctttcatcttccgttatctttataataacatcgacacaaa |
42770383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 42770529 - 42770487
Alignment:
| Q |
1 |
cgatgttattataaagataacggaagatgaaaggattaaagaa |
43 |
Q |
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||||||||| ||||||||||| |||||| |||||||||||||| |
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| T |
42770529 |
cgatgttatgataaagataacagaagatcaaaggattaaagaa |
42770487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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