View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20966_low_16 (Length: 335)
Name: NF20966_low_16
Description: NF20966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20966_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 33 - 324
Target Start/End: Complemental strand, 45410275 - 45409984
Alignment:
| Q |
33 |
ttaatgctatagaaaggttcaaaatcaagtgcatgacagcaattatatgcattgaatttacctataagtaggccattgtgaatcatgtgttgctcttttt |
132 |
Q |
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| T |
45410275 |
ttaatgctatagaaaggttcaaaatcaagtgcatgacagcaattatatgcattgaatttacctataagtaggccattgtgaatcatgtgttgctcttttt |
45410176 |
T |
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| Q |
133 |
caccttatgtgttagatcaattagatgcagtaaaagttagttacactaaagttttgtttgacaagacaaaattttgaggtgttacaagctcatatcataa |
232 |
Q |
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| T |
45410175 |
caccttatgtgttagatcaattagatttagtaaaagttagttacactaaagttttgtttgacaagacaaaattttgaggtgttacaagctcatatcataa |
45410076 |
T |
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| Q |
233 |
aaatagatccgtttagtaacaattttttcttaggagtttataacttagtttaatagttaataagataattgaagtagcttatattttttcat |
324 |
Q |
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| T |
45410075 |
aaatagatccgtttagtaacaattttttcttaggagtttataacttagtttaatagttaataagataattgaagtagcttatagtttttcat |
45409984 |
T |
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