View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20966_low_17 (Length: 335)
Name: NF20966_low_17
Description: NF20966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20966_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 40690154 - 40689837
Alignment:
| Q |
1 |
agcataggcaaacttagattctctatgatcatcttcaggtgcaggaaggttgagatccaaatccaaagacaaaacattccttttctttctaggatgatct |
100 |
Q |
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| T |
40690154 |
agcaaaggcaaacttagattctctatgatcatcttcaggtgcaggaaggttgagatccaaatccaaagacaaaacattccttttctttctaggatgatct |
40690055 |
T |
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| Q |
101 |
tcatcaggttccaaagccattggtgtcaaagagagtgtagtgttggctgcagatgttcccaccggcgcgcggtgacgcctcatatggccacctagtgctt |
200 |
Q |
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| T |
40690054 |
tcatcaggttccaaagccattgttgtcaaagagagtgtggtgttggctgcagaagttcccaccggtgcacggtggcgcctcatatggccacctagtgctt |
40689955 |
T |
|
| Q |
201 |
gaccagatgtgaattcagaaccacaaatggaacactcatgaaccttagacttgttgttattgttgcttccaccatgtagatttcccttaccattgttatt |
300 |
Q |
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| T |
40689954 |
gaccagatgtgaattcagaaccacaaatggaacactcatgaaccttagacttgttgttattgttgcttccaccatgtagatttcccttaccattgttatt |
40689855 |
T |
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| Q |
301 |
caattgaagggaaattga |
318 |
Q |
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| T |
40689854 |
caattgaagagaaattga |
40689837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 256
Target Start/End: Complemental strand, 34710589 - 34710513
Alignment:
| Q |
180 |
tcatatggccacctagtgcttgaccagatgtgaattcagaaccacaaatggaacactcatgaaccttagacttgttg |
256 |
Q |
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| T |
34710589 |
tcatatggccaccaagtgcctggccagatgtgaatttagaaccacaaatggagcacccataaaccttggatttgttg |
34710513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 180 - 246
Target Start/End: Complemental strand, 34714285 - 34714219
Alignment:
| Q |
180 |
tcatatggccacctagtgcttgaccagatgtgaattcagaaccacaaatggaacactcatgaacctt |
246 |
Q |
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| T |
34714285 |
tcatatggccaccaagtgcctggccagatgtgaatttagaaccacaaatggagcacccataaacctt |
34714219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 93
Target Start/End: Complemental strand, 34714447 - 34714363
Alignment:
| Q |
6 |
aggcaaacttagattctctatgatcatcttcaggtgcaggaaggttgagatccaaatccaaagacaaaacattccttttctttctagg |
93 |
Q |
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| T |
34714447 |
aggcaaacttgaactctctttgatcttcttaagctgcaggaaggttgagatccaaatccaaag---agacattcattttctttctagg |
34714363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 34710740 - 34710689
Alignment:
| Q |
17 |
gattctctatgatcatcttcaggtgcaggaaggttgagatccaaatccaaag |
68 |
Q |
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| T |
34710740 |
gattctctttgatcttcttaagctgcaggaaggttgagatccaaatccaaag |
34710689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 255
Target Start/End: Original strand, 20925729 - 20925806
Alignment:
| Q |
178 |
cctcatatggccacctagtgcttgaccagatgtgaattcagaaccacaaatggaacactcatgaaccttagacttgtt |
255 |
Q |
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| T |
20925729 |
cctcatgtgtccacccaatgcttgtccggatgtgaactctgaaccacaaatggaacactcatgaatcttggccttgtt |
20925806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 247
Target Start/End: Complemental strand, 35506246 - 35506177
Alignment:
| Q |
178 |
cctcatatggccacctagtgcttgaccagatgtgaattcagaaccacaaatggaacactcatgaacctta |
247 |
Q |
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| T |
35506246 |
cctcatgtgaccacccaatgcttgacctgatgtgaattcagctccacatattgaacacccatgaacctta |
35506177 |
T |
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