View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20966_low_2 (Length: 518)
Name: NF20966_low_2
Description: NF20966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20966_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 467; Significance: 0; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 8 - 502
Target Start/End: Complemental strand, 24121206 - 24120712
Alignment:
| Q |
8 |
tgagatgaatggagagagatgtttaacgtcacaggaactcaaaaacaaactaactaagcctcgtatttttgccaattttgaactcaagaagcaaatacta |
107 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
24121206 |
tgagttgaatgcagagagatgtttaacgtcacaggaactcaaaaacaaactaactaagcctcgtatttttgccaattttgaactcaagaaccagatacta |
24121107 |
T |
|
| Q |
108 |
ccaattggaacgtgtccgttaacttgcacgtttgatagtggtgaacccgcgaaacttgttgatcctaaatcctctctttctggaggatatatcaaaggac |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24121106 |
ccaattggaacgtgtccgttaacttgcacgtttgatagtggtgaacccgcgaaacttgttgatcctaaatcctctctttctggaggatatatcaaaggac |
24121007 |
T |
|
| Q |
208 |
cattaacaattatggtgacagacgacttggttgtgactccaatgtcatccattgacgctgtttcatatctaaaaagaatgaaggtccctcttaatgacgt |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
24121006 |
cattaacaattatggtgacagacgacttggttgtgactccaatgtcatccattgacgctgtttcatatctagaaagaatgaaggtccctcttaatgacgt |
24120907 |
T |
|
| Q |
308 |
ggaggaaattttcattagtattggtgtagaggaggtaaatggagtgtgtgagactttagttttaatatttcttgtttcagactcgtaacaactaacaata |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24120906 |
ggaggaaattttcattagtattggtgtagaggaggtaaatggagtgtgtgagactttagttttaatatttcttgtttcagactcgtaacaactaacaata |
24120807 |
T |
|
| Q |
408 |
tttagttgcatttatggttgcagggtctcagcatactgaaagcttcgttaacctcaacatccgctttgacaaatggcctcaagcagtacataggt |
502 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
24120806 |
tttagttgcatatatggttgcagggtctcagcatactgaaagcttcgttaacctcaacatccgctttgacaaacggcctcaagcagtacataggt |
24120712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 209 - 502
Target Start/End: Complemental strand, 24131471 - 24131162
Alignment:
| Q |
209 |
attaacaattatggtgacagacgacttggttgtgactccaatgtcatccattgacgctgtttcatatctaaaaagaatgaaggtccctcttaatgacgtg |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
24131471 |
attaacaattatggtgacagacgacttggttgtgactccaatgtcatccattgatgctgtttcgtatctagaaagaatgaaggtccctcttaatgacgtg |
24131372 |
T |
|
| Q |
309 |
gaggaaattttcattagtattggtgtagaggaggtaaatggagtgtgtgaga----------------ctttagttttaatatttcttgtttcagactcg |
392 |
Q |
| |
|
||||||||| | ||||||||||||| |||||||||| ||| ||| | | |||| ||||||||||| ||||||||||||| |
|
|
| T |
24131371 |
gaggaaattgttgttagtattggtgtgaaggaggtaaacggatggtgcaacatttcaattagcacattctttcattttaatattttttgtttcagactca |
24131272 |
T |
|
| Q |
393 |
taacaactaacaatatttagttgcatttatggttgcagggtctcagcatactgaaagcttcgttaacctcaacatccgctttgacaaatggcctcaagca |
492 |
Q |
| |
|
||| | ||||||||||||| ||| || |||||||| |||||||||||||||| ||| |||| | ||||||||||| |||||||| || |||||||| || |
|
|
| T |
24131271 |
taaaagctaacaatatttaattggatatatggttgtagggtctcagcatactaaaatcttcactgacctcaacatctgctttgaccaacggcctcaacca |
24131172 |
T |
|
| Q |
493 |
gtacataggt |
502 |
Q |
| |
|
|||||||||| |
|
|
| T |
24131171 |
gtacataggt |
24131162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 163 - 502
Target Start/End: Complemental strand, 24158574 - 24158230
Alignment:
| Q |
163 |
ttgttgatcctaaatcctctctttctggaggatatatcaaaggaccattaacaattatggtgacagacgacttggttgtgactccaatgtcatccattga |
262 |
Q |
| |
|
|||||||||| |||| | || |||||||||||||| | | |||||| ||||||| ||||||||||||||||||||||| ||||||||| ||||| || || |
|
|
| T |
24158574 |
ttgttgatcccaaattccctgtttctggaggatatgttagaggaccgttaacaactatggtgacagacgacttggttgcgactccaatttcatctatcga |
24158475 |
T |
|
| Q |
263 |
cgctgtttcatatctaaaaagaatgaaggtccctcttaatgacgtggaggaaattttcattagtattggtgtagaggaggtaaatggagtgtgtgagact |
362 |
Q |
| |
|
| ||||||||||||| |||||||||| ||| | ||| ||| ||||||||||| |||||||||||||||| |||| ||||| ||||||||| ||||| |
|
|
| T |
24158474 |
tggtgtttcatatctagaaagaatgaatgtctcccttgttgatttggaggaaattgtcattagtattggtgttaaggaagtaaaaggagtgtgtaagact |
24158375 |
T |
|
| Q |
363 |
-----ttagttttaatatttcttgtttcagactcgtaacaactaacaatatttagttgcatttatggttgcagggtctcagcatactgaaagcttcgtta |
457 |
Q |
| |
|
|| ||||||||| |||||| ||| | | ||| |||| |||||||| |||||| ||||||||||||||||||||||||| ||||| || || |
|
|
| T |
24158374 |
taaccttcattttaatatatcttgtatcaaattgataataactcgcaatatttgattgcatatatggttgcagggtctcagcatactaaaagcgtcattg |
24158275 |
T |
|
| Q |
458 |
acctcaacatccgctttgacaaatggcctcaagcagtacataggt |
502 |
Q |
| |
|
||||||||||| |||| ||||| |||||||| |||||||||||| |
|
|
| T |
24158274 |
acctcaacatcttctttaacaaacggcctcaaccagtacataggt |
24158230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 163 - 502
Target Start/End: Complemental strand, 24137425 - 24137087
Alignment:
| Q |
163 |
ttgttgatcctaaatcctctctttctggaggatatatcaaaggaccattaacaattatggtgacagacgacttggttgtgactccaatgtcatccattga |
262 |
Q |
| |
|
||||||||||||||||| || |||||||||||||| | || ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
24137425 |
ttgttgatcctaaatcccctatttctggaggatatgctagagcaccattaacgtttatggtgacagacgaattggttgtgactccaatgtcatccattga |
24137326 |
T |
|
| Q |
263 |
cgctgtttcatatctaaaaagaatgaaggtccctcttaatgacgtggaggaaattttcattagtattggtgtagaggaggt-aaatggagtgtgtgagac |
361 |
Q |
| |
|
| | |||||||||| ||||||||||||| || |||| ||||||||||||||| || ||| |||||| ||||||| ||| |||| |||| || | |
|
|
| T |
24137325 |
tggtatttcatatcttgaaagaatgaaggttccccttagtgacgtggaggaaatggtcgttattattggccagaaggaggtaaaagggagcgtgttagtc |
24137226 |
T |
|
| Q |
362 |
tttagttttaatatttcttgtttcagactcgtaacaactaacaatatttagttgcatttatggttgcagggtctcagcatactgaaagcttcgttaacct |
461 |
Q |
| |
|
||| |||||||||||||| | | ||| || |||||||| || |||||| || || | ||||||||||||||||||||||| | |||||| || |||| |
|
|
| T |
24137225 |
tttcattttaatatttcttatattagattcataacaactcaccatatttgatttca--tgtggttgcagggtctcagcatacttagagcttcattgacct |
24137128 |
T |
|
| Q |
462 |
caacatccgctttgacaaatggcctcaagcagtacataggt |
502 |
Q |
| |
|
||| ||| || |||||||| || ||||| |||||||||||| |
|
|
| T |
24137127 |
caaaatctgccttgacaaacggtctcaaccagtacataggt |
24137087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 166 - 494
Target Start/End: Complemental strand, 24145158 - 24144831
Alignment:
| Q |
166 |
ttgatcctaaatcctctctttctggaggatatatcaaaggaccattaacaattatggtgacagacgacttggttgtgactccaatgtcatccattgacgc |
265 |
Q |
| |
|
|||||||||||||| || ||||||| |||||| || | ||||||| |||||||||||||||| ||||||||||||||||||||||||||||| | |
|
|
| T |
24145158 |
ttgatcctaaatcccctatttctggtggatatgctggagcatcattaacgtttatggtgacagacgaattggttgtgactccaatgtcatccattgatgg |
24145059 |
T |
|
| Q |
266 |
tgtttcatatctaaaaagaatgaaggtccctcttaatgacgtggaggaaattttcattagtattggtgtagaggaggtaaat-ggagtgtgtgagacttt |
364 |
Q |
| |
|
| |||||||||| |||||||||||||| | |||||||||||||||||||| || ||| |||||| ||||||||||| ||||||||| || |||| |
|
|
| T |
24145058 |
tatttcatatcttgaaagaatgaaggtctcacttaatgacgtggaggaaatggtccttaatattggccagaaggaggtaaatgggagtgtgttagtcttt |
24144959 |
T |
|
| Q |
365 |
agttttaatatttcttgtttcagactcgtaacaactaacaatatttagttgcatttatggttgcagggtctcagcatactgaaagcttcgttaacctcaa |
464 |
Q |
| |
|
|||||||||||||||| | ||| || |||||||| || |||||| || || | ||||||||||||||| ||||||| | |||||| || ||||||| |
|
|
| T |
24144958 |
cattttaatatttcttgtattagattcataacaactcaccatatttgatttca--tgtggttgcagggtctcggcatacttagagcttcattgacctcaa |
24144861 |
T |
|
| Q |
465 |
catccgctttgacaaatggcctcaagcagt |
494 |
Q |
| |
|
||| || |||||||| |||||||| |||| |
|
|
| T |
24144860 |
aatctgccttgacaaacggcctcaaccagt |
24144831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 166 - 502
Target Start/End: Complemental strand, 24125855 - 24125520
Alignment:
| Q |
166 |
ttgatcctaaatcctctctttctggaggatatatcaaaggaccattaacaattatggtgacagacgacttggttgtgactccaatgtcatccattgacgc |
265 |
Q |
| |
|
|||||||||||||| || ||||||| |||||| || | ||||||| ||||||||||||| |||||| ||||||||||||||||||||||||| | |
|
|
| T |
24125855 |
ttgatcctaaatcccctatttctggtggatatgctggagcatcattaacgtttatggtgacagatgacttgattgtgactccaatgtcatccattgatgg |
24125756 |
T |
|
| Q |
266 |
tgtttcatatctaaaaagaatgaaggtccctcttaatgacgtggaggaaattttcattagtattggtgtagaggaggt-aaatggagtgtgtgagacttt |
364 |
Q |
| |
|
| |||||||||| ||||||||||||| || |||| ||||||||||||||| || ||| |||||| ||||||| ||| |||| |||| || |||| |
|
|
| T |
24125755 |
tatttcatatcttgaaagaatgaaggttccccttagtgacgtggaggaaatggtcgttactattggccagaaggaggtaaaagggagcgtgttagtcttt |
24125656 |
T |
|
| Q |
365 |
agttttaatatttcttgtttcagactcgtaacaactaacaatatttagttgcatttatggttgcagggtctcagcatactgaaagcttcgttaacctcaa |
464 |
Q |
| |
|
|||||||||||||| | | ||| || |||||||| || |||||| || || | ||||||||||||||||||||||| | |||||| || ||||||| |
|
|
| T |
24125655 |
cattttaatatttcttatattagattcataacaactcaccatatttgatttca--tgtggttgcagggtctcagcatacttagagcttcattgacctcaa |
24125558 |
T |
|
| Q |
465 |
catccgctttgacaaatggcctcaagcagtacataggt |
502 |
Q |
| |
|
||| || |||||||| || ||||| |||||||||||| |
|
|
| T |
24125557 |
aatctgccttgacaaacggtctcaaccagtacataggt |
24125520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 167 - 502
Target Start/End: Complemental strand, 24153310 - 24152970
Alignment:
| Q |
167 |
tgatcctaaatcctctctttctggaggatatatcaaaggaccattaacaattatggtgacagacgacttggttgtgactccaatgtcatccattgacgct |
266 |
Q |
| |
|
|||||| ||| || ||||||||||||||||| ||| |||||| ||||| ||| ||||||||||||||||||||||||||||||| ||||| ||||| ||| |
|
|
| T |
24153310 |
tgatccaaaacccactctttctggaggatatgtcagaggacctttaacgattttggtgacagacgacttggttgtgactccaatttcatctattgatgct |
24153211 |
T |
|
| Q |
267 |
gtttcatatctaaaaagaatgaaggtccctcttaatgacgtggaggaaattttcattagtattggtgtagaggaggtaaatggagtgtgtgagact---- |
362 |
Q |
| |
|
|||||||||||| ||| | ||||||| || ||| |||| || ||||||| |||| ||||||||||| |||||||||| ||||||||| ||| |
|
|
| T |
24153210 |
gtttcatatctagaaaaattgaaggtaccccttgatgatttgaaggaaatggtcataagtattggtgttaaggaggtaaaaggagtgtgtacaactaaac |
24153111 |
T |
|
| Q |
363 |
--ttagttttaatatttcttgtttcagactcgtaacaactaacaatatttagttgcatttatggttgcagggtctcagcatactgaaagcttcgttaacc |
460 |
Q |
| |
|
| | |||||||| ||| | ||| | | |||||||| ||||||||| |||||| ||||| ||||||||||||||||| | |||||||| | ||| |
|
|
| T |
24153110 |
catcatctttaatatgtctagcatcaaattgataacaactcacaatatttgtttgcatatatgg-tgcagggtctcagcatattaaaagcttcatcgacc |
24153012 |
T |
|
| Q |
461 |
tcaacatccgctttgacaaatggcctcaagcagtacataggt |
502 |
Q |
| |
|
|||||| ||||| ||||| |||||||| | |||||||||| |
|
|
| T |
24153011 |
acaacatgtgctttaacaaacggcctcaaaccgtacataggt |
24152970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 203 - 315
Target Start/End: Complemental strand, 24150103 - 24149991
Alignment:
| Q |
203 |
aggaccattaacaattatggtgacagacgacttggttgtgactccaatgtcatccattgacgctgtttcatatctaaaaagaatgaaggtccctcttaat |
302 |
Q |
| |
|
||||||||||||| | |||||||| |||||||||||||||||||||||||| || || | |||||||||| || |||||||||||||||| |||||| |
|
|
| T |
24150103 |
aggaccattaacattcatggtgaccgacgacttggttgtgactccaatgtcgtcaatatctggtgtttcatatttagaaagaatgaaggtcccccttaat |
24150004 |
T |
|
| Q |
303 |
gacgtggaggaaa |
315 |
Q |
| |
|
|| ||||| |||| |
|
|
| T |
24150003 |
gatgtggaagaaa |
24149991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 390 - 480
Target Start/End: Complemental strand, 24159963 - 24159873
Alignment:
| Q |
390 |
tcgtaacaactaacaatatttagttgcatttatggttgcagggtctcagcatactgaaagcttcgttaacctcaacatccgctttgacaaa |
480 |
Q |
| |
|
|||||||| |||||||||||| |||||| ||||||||||||||||||||| ||||||||||| || ||||||||||| |||||||||| |
|
|
| T |
24159963 |
tcgtaacatctaacaatatttgattgcataaatggttgcagggtctcagcattctgaaagcttcattgacctcaacatcttctttgacaaa |
24159873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 489
Target Start/End: Complemental strand, 24231217 - 24231156
Alignment:
| Q |
428 |
cagggtctcagcatactgaaagcttcgttaacctcaacatccgctttgacaaatggcctcaa |
489 |
Q |
| |
|
||||||||||||||||| |||||||| | |||||| | || |||||||||||||| ||||| |
|
|
| T |
24231217 |
cagggtctcagcatacttaaagcttcactgacctcagcttctgctttgacaaatggtctcaa |
24231156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 489
Target Start/End: Original strand, 24285530 - 24285595
Alignment:
| Q |
424 |
gttgcagggtctcagcatactgaaagcttcgttaacctcaacatccgctttgacaaatggcctcaa |
489 |
Q |
| |
|
|||||| ||||||||||| ||||| ||||| || || ||||| || |||||||||||||| ||||| |
|
|
| T |
24285530 |
gttgcaaggtctcagcattctgaaggcttcattgacatcaacgtctgctttgacaaatggtctcaa |
24285595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 166 - 315
Target Start/End: Original strand, 15381331 - 15381480
Alignment:
| Q |
166 |
ttgatcctaaatcctctctttctggaggatatatcaaaggaccattaacaattatggtgacagacgacttggttgtgactccaatgtcatccattgacgc |
265 |
Q |
| |
|
|||||||||||||| || |||||||||||||| |||||||||| | || | || |||||||||||| |||| ||||| || | |||||||||| | |
|
|
| T |
15381331 |
ttgatcctaaatcccctatttctggaggatatgtcaaaggaccgattaccttcatcgtgacagacgacatggtagtgaccccgttatcatccattgctgt |
15381430 |
T |
|
| Q |
266 |
tgtttcatatctaaaaagaatgaaggtccctcttaatgacgtggaggaaa |
315 |
Q |
| |
|
|||||| |||||| ||||||||||||| | ||||||| |||||||||| |
|
|
| T |
15381431 |
tgtttcctatctagaaagaatgaaggttgcctttaatgatgtggaggaaa |
15381480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 499
Target Start/End: Original strand, 3152614 - 3152681
Alignment:
| Q |
432 |
gtctcagcatactgaaagcttcgttaacctcaacatccgctttgacaaatggcctcaagcagtacata |
499 |
Q |
| |
|
||||||||||||| ||||||||| ||| |||||| | ||||||||||||| |||||||||| |||| |
|
|
| T |
3152614 |
gtctcagcatactaaaagcttcgataatctcaacgttttctttgacaaatggtctcaagcagttcata |
3152681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 219 - 253
Target Start/End: Original strand, 10990047 - 10990081
Alignment:
| Q |
219 |
atggtgacagacgacttggttgtgactccaatgtc |
253 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |
|
|
| T |
10990047 |
atggtgacagatgacttggttgtgactccaatgtc |
10990081 |
T |
|
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