View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20966_low_23 (Length: 298)
Name: NF20966_low_23
Description: NF20966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20966_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 17 - 284
Target Start/End: Complemental strand, 3922478 - 3922211
Alignment:
| Q |
17 |
aatttcaagaagcatgagcatccttgtcacatagatgcaacattatctggtgctgatacaacaaattatgatgatttagaagaagaacttgatttctttc |
116 |
Q |
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| T |
3922478 |
aatttcaagaagcatgagcatccttgtcacatagatgcaacattatctggtgctgatacaacaaattatgatgatttagaagaagaacttgttttctttc |
3922379 |
T |
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| Q |
117 |
caactcaaattggaggtgaacatttgagaaggaggtatgataggttgagagtcattggtaggaatggacaaaaaagggttgatgaattggccaccatttt |
216 |
Q |
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| T |
3922378 |
caactcaaattggaggtgaacatttgagaaggaggtatgataggttgagagtcattggtaggaatggacaaaaaagggttgatgaattggccaccatttt |
3922279 |
T |
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| Q |
217 |
agaaaagctacaatctctgatcagttggagggatccaagagctacatttatatttttggtgttctgtg |
284 |
Q |
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| T |
3922278 |
agaaaagctacaatctctgatcagttggagggatccaagagctacatttatatttttggtgttctgtg |
3922211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 17 - 253
Target Start/End: Original strand, 34958163 - 34958404
Alignment:
| Q |
17 |
aatttcaagaagcatgagcatccttgtcacatagatgcaacatta-----tctggtgctgatacaacaaattatgatgatttagaagaagaacttgattt |
111 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
34958163 |
aatttcaaaaagcatgagcatccttgtcacatagatgcaacattatattatctggtgctgatacaacaaattctgatgatttagaagaagaacttgattt |
34958262 |
T |
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| Q |
112 |
ctttccaactcaaattggaggtgaacatttgagaaggaggtatgataggttgagagtcattggtaggaatggacaaaaaagggttgatgaattggccacc |
211 |
Q |
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|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||| || ||| |
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| T |
34958263 |
ctttccaactcaaactggaggtgaagatttgagaaggaggtatgataggttgagagtcattggcaggaatgcacaaaaaagggttgatcaattagctacc |
34958362 |
T |
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| Q |
212 |
attttagaaaagctacaatctctgatcagttggagggatcca |
253 |
Q |
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| T |
34958363 |
attttagaaaagctacaatttctgatcagttggagggatcca |
34958404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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