View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20966_low_25 (Length: 287)
Name: NF20966_low_25
Description: NF20966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20966_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 16 - 269
Target Start/End: Complemental strand, 6121623 - 6121370
Alignment:
| Q |
16 |
atgtgataccccacaacaaaagcaagttaattacacaatttgtaaaactaaacttatttagtgaaagcactatttcttaggagatttccatctccataat |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
6121623 |
atgtgataccccacaacaaaagcaagttaattacacaatttgtaaaactaaacttatttagtgaaagcactatgtcttaggagatttccatctccataat |
6121524 |
T |
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| Q |
116 |
attactcaatcataagatacatcacattttaatacaagtattaaaaaatagtacaaagaaactaacacaatggagctagtttacaacatatgtctcagga |
215 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6121523 |
attactcaatcataagatagatcacattttaatacaagtattaaaaaatagtacaaagaaactaacacaatggagctagtttacaacatatgtctcagga |
6121424 |
T |
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| Q |
216 |
tttgtctcatagaatagcaatgaaagcttcgagaactaaattgtaacgtgatct |
269 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
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| T |
6121423 |
tttgtctcataaaatagcaatgaaagcttcgagaactaaattggaacgtgatct |
6121370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 269
Target Start/End: Complemental strand, 6114705 - 6114452
Alignment:
| Q |
16 |
atgtgataccccacaacaaaagcaagttaattacacaatttgtaaaactaaacttatttagtgaaagcactatttcttaggagatttccatctccataat |
115 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6114705 |
atgtaataccccacaacaaaagcaagttaattacacaatttgtaaacctaaacttatttagtgaaagcactatttcttaggagatttccatctccataat |
6114606 |
T |
|
| Q |
116 |
attactcaatcataagatacatcacattttaatacaagtattaaaaaatagtacaaagaaactaacacaatggagctagtttacaacatatgtctcagga |
215 |
Q |
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| T |
6114605 |
attactcaatcataagatagatcacattttaatacaagtattaaacaatagtacaaagaaactaacacaatggggctagtttacaacatatgtctcagga |
6114506 |
T |
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| Q |
216 |
tttgtctcatagaatagcaatgaaagcttcgagaactaaattgtaacgtgatct |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6114505 |
tttgtctcatagaatagcaatgaaagcttcgagaactaaattgtaacgtgatct |
6114452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 16 - 255
Target Start/End: Original strand, 6076413 - 6076652
Alignment:
| Q |
16 |
atgtgataccccacaacaaaagcaagttaattacacaatttgtaaaactaaacttatttagtgaaagcactatttcttaggagatttccatctccataat |
115 |
Q |
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||||||||||| | | |||||| | ||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||| |
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| T |
6076413 |
atgtgataccctaaaccaaaagtgatttaattacacaatttgtaaaactaaacttatttagtgaaagcactgtgtcttcggagatttccatctccataat |
6076512 |
T |
|
| Q |
116 |
attactcaatcataagatacatcacattttaatacaagtattaaaaaatagtacaaagaaactaacacaatggagctagtttacaacatatgtctcagga |
215 |
Q |
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|||||||||| |||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6076513 |
attactcaataataagatagatcaaattttaatacaagtattagaaaatagtacaaagaaactaacacaatggagctagtttacaacatatgtctcagga |
6076612 |
T |
|
| Q |
216 |
tttgtctcatagaatagcaatgaaagcttcgagaactaaa |
255 |
Q |
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||||||| |||||||| |||||| |||| |||||||||| |
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| T |
6076613 |
tttgtcttatagaatataaatgaacgcttagagaactaaa |
6076652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 84 - 256
Target Start/End: Original strand, 6088732 - 6088905
Alignment:
| Q |
84 |
actatttcttaggagatttccatctccataatattactcaatcataagatacatcacattttaatacaagtattaaaaaatagtac-aaagaaactaaca |
182 |
Q |
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||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||| ||| ||||||||| |
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| T |
6088732 |
actatgtcttaggagatttccatctccataatattcctcaatcataagatagatcacattttaatacaagtatttaaaaatagtacaaaaaaaactaaca |
6088831 |
T |
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| Q |
183 |
caatggagctagtttacaacatatgtctcaggatttgtctcatagaatagcaatgaaagcttcgagaactaaat |
256 |
Q |
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||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||| ||||||||||| |
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| T |
6088832 |
caatggagctagtttacaacagatgtctcaggatttatctcatagaattgcaatgaaagcttagagaactaaat |
6088905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 149
Target Start/End: Complemental strand, 7771031 - 7770977
Alignment:
| Q |
95 |
ggagatttccatctccataatattactcaatcataagatacatcacattttaata |
149 |
Q |
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|||||||||||||| ||||||||| || |||||||||||| |||||||||||||| |
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| T |
7771031 |
ggagatttccatcttcataatattccttaatcataagatagatcacattttaata |
7770977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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