View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20966_low_27 (Length: 266)
Name: NF20966_low_27
Description: NF20966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20966_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 3 - 227
Target Start/End: Original strand, 26074184 - 26074408
Alignment:
| Q |
3 |
acaattatcgtatcagacatcaaacacgtttttatatgaagtgtcggtgttacatggttaatcaggtagccataatttttctttggagggaaaagtcttt |
102 |
Q |
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| T |
26074184 |
acaattatcgtatcaaacatcaaacacgttttcatatgaagtgtcggtgttacatggttaatcaggtagccataatttttctttggaaggaaaagtcttt |
26074283 |
T |
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| Q |
103 |
tcaattcaagttaattttcattttttaactgatttgttagttgatgaaattacataccccaatactgtattggtgattaacaagtgtggcatttgtagga |
202 |
Q |
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| T |
26074284 |
ttaattcaagttaatttttattttttaactgatttgttagttgatgaaaatacataccccaatactgtattggtgattaacaagtgtggcatttgtagga |
26074383 |
T |
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| Q |
203 |
aggtagtttctgtctaaggatttca |
227 |
Q |
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| T |
26074384 |
aggtagtttctgtctaaggatttca |
26074408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 26093831 - 26094072
Alignment:
| Q |
8 |
tatcgtatcagacatcaaacacgtttttatatgaagtgtcggtgttacatggttaatcaggtagccataatttttctttggagggaaaagtcttttcaat |
107 |
Q |
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| T |
26093831 |
tatcgcattagacatcaaacatgtttttatataaagtgtcggtgttacatagttaatcagataagcacaatttttctttagaaggaaaagtcttttcaat |
26093930 |
T |
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| Q |
108 |
tcaagttaattttcattttttaactgatttgttagttgatgaaattacataccccaatactgtattggtgattaacaagtgtggcatttgtaggaaggta |
207 |
Q |
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| T |
26093931 |
tcaagttaatttttatttt-taactgatttgttagttgatgaaaatacataccccaatactgtattggtggttaacaagtgtggcatttgtaggaaggta |
26094029 |
T |
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| Q |
208 |
gtttctgtctaaggatttcaatacattgttcacaacaatattt |
250 |
Q |
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| T |
26094030 |
gtttctgtctaaggatttcaatacattgttcacaacaatattt |
26094072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 124 - 229
Target Start/End: Original strand, 26105377 - 26105483
Alignment:
| Q |
124 |
tttttaactgatttgt-tagttgatgaaattacataccccaatactgtattggtgattaacaagtgtggcatttgtaggaaggtagtttctgtctaagga |
222 |
Q |
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||||||| ||||||| ||||||||||| ||||||||||||| || |||||| ||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
26105377 |
tttttaagagatttgtatagttgatgaacatacataccccaatgttgaattggttgttaacaagtgtagcatttgtgggaaggtagtttctgtctaagga |
26105476 |
T |
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| Q |
223 |
tttcaat |
229 |
Q |
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| T |
26105477 |
tttcaat |
26105483 |
T |
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