View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20966_low_28 (Length: 260)
Name: NF20966_low_28
Description: NF20966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20966_low_28 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 13 - 260
Target Start/End: Original strand, 11890597 - 11890844
Alignment:
| Q |
13 |
catcacagttaaggactttgactatgtcaaatatggttcaacagtgtgtaaggctgccctttatgctccacctaagggttcacccttcaacatacctaca |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11890597 |
catcacagttaaggactttgactatgtcaaatatggttcaacagtgtgcaaggctgccctttatgctccacctaagggttcacccttcaacatacctaca |
11890696 |
T |
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| Q |
113 |
aagctaaaccaaggaacaaagttgtccttgaaatccaaagacaagtacgaggtagtgctcaaagctaagccatttgcttatgcttcaaagaaacatttca |
212 |
Q |
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|||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
11890697 |
aagctaaaccaaggaacaaacttgtacttgaaatccaaagacaagtacgaggttgtgctcaaggctaagccatttgcttatgcttcaaagaaacatttca |
11890796 |
T |
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| Q |
213 |
aagaatgtgagaagcccaagacttcaccaactccttactactacaaat |
260 |
Q |
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| T |
11890797 |
aagaatgtgagaagtccaagccttcaccaactccttactactacaaat |
11890844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 13 - 260
Target Start/End: Original strand, 11881231 - 11881478
Alignment:
| Q |
13 |
catcacagttaaggactttgactatgtcaaatatggttcaacagtgtgtaaggctgccctttatgctccacctaagggttcacccttcaacatacctaca |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
11881231 |
catcacagttaaggactttgactatgtcaaatatggttcgacagtgtgcaaggctgccctatatgctccacctaagggttcacccttcaacatacctaca |
11881330 |
T |
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| Q |
113 |
aagctaaaccaaggaacaaagttgtccttgaaatccaaagacaagtacgaggtagtgctcaaagctaagccatttgcttatgcttcaaagaaacatttca |
212 |
Q |
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| T |
11881331 |
aagctaaatcaaggaacaaagttgtacttgaaatccaaagacaagtacgaggttgtgctcaaggctaagccatttgcttatgcttcaaagaaacatttca |
11881430 |
T |
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| Q |
213 |
aagaatgtgagaagcccaagacttcaccaactccttactactacaaat |
260 |
Q |
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| T |
11881431 |
aagaatgtgagaagcctaagccttcaccaactccttactactacaaat |
11881478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 13 - 253
Target Start/End: Original strand, 11903731 - 11903971
Alignment:
| Q |
13 |
catcacagttaaggactttgactatgtcaaatatggttcaacagtgtgtaaggctgccctttatgctccacctaagggttcacccttcaacatacctaca |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11903731 |
catcacagttaaggactttgactatgtcaaatatggttcgacagtgtgcaaggctaccctttatgctccacctaagggttcacccttcaacatacctaca |
11903830 |
T |
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| Q |
113 |
aagctaaaccaaggaacaaagttgtccttgaaatccaaagacaagtacgaggtagtgctcaaagctaagccatttgcttatgcttcaaagaaacatttca |
212 |
Q |
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|||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
11903831 |
aagctaaatcaaggaacaaagttgtacttgaaatccaaagacaagtacgaggttgtgctcaaggctaagccatttgcttatgcttcaaagaaacatttca |
11903930 |
T |
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| Q |
213 |
aagaatgtgagaagcccaagacttcaccaactccttactac |
253 |
Q |
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| T |
11903931 |
aagaatgtgagaagcctaagccttcaccaactcctttctac |
11903971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 74 - 258
Target Start/End: Complemental strand, 52820007 - 52819823
Alignment:
| Q |
74 |
tatgctccacctaagggttcacccttcaacatacctacaaagctaaaccaaggaacaaagttgtccttgaaatccaaagacaagtacgaggtagtgctca |
173 |
Q |
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|||||||||||||| | || ||||||||||||||||| ||||| || | ||||| | ||| | ||||| ||||||||||| || || ||||||| |
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| T |
52820007 |
tatgctccacctaaagactctcccttcaacatacctactaagctcaatgagggaactgacttgaaggtaaaatctaaagacaagtatgaagttgtgctca |
52819908 |
T |
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| Q |
174 |
aagctaagccatttgcttatgcttcaaagaaacatttcaaagaatgtgagaagcccaagacttcaccaactccttactactacaa |
258 |
Q |
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| T |
52819907 |
aggctaagccattcgcatatgcttctaagaagcattatgaagaatgtgaaaaacctaagccttcaccaactccttactactacaa |
52819823 |
T |
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