View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20966_low_29 (Length: 255)
Name: NF20966_low_29
Description: NF20966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20966_low_29 |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 10 - 237
Target Start/End: Original strand, 14766786 - 14767013
Alignment:
| Q |
10 |
attatactaaaattgaccatcgtgattatatatagtctcacaccaatcatagcaaaggaaattgaaacaaacattagtttaaggtctacaaggaagaaat |
109 |
Q |
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| T |
14766786 |
attatactaaaattgaccatcgtgattatatatagtctcacaccaatcatagcaaaggaaattgaaacaaacattagtttaaggtctacaaggaagaaat |
14766885 |
T |
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| Q |
110 |
aatgaaactaggttttggaccaccaatagtaggttggttgatgttgttcttaagcacactatctaactctttaacgaacttctccatggcttgagctggt |
209 |
Q |
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| T |
14766886 |
aatgaaactaggttttggaccaccaatagtaggttggttgatgttgttcttaagcacactatctaactctttaacgaacttctccatggcttgagctggt |
14766985 |
T |
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| Q |
210 |
aaacaaagtggtataaccaaaccttcct |
237 |
Q |
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| T |
14766986 |
aaacaaagtggtataaccaaaccttcct |
14767013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 36 - 235
Target Start/End: Original strand, 14873019 - 14873218
Alignment:
| Q |
36 |
tatatatagtctcacaccaatcatagcaaaggaaattgaaacaaacattagtttaaggtctacaaggaagaaataatgaaactaggttttggaccaccaa |
135 |
Q |
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| T |
14873019 |
tatatatagtctcacacatatcatagcaaaggaaattcatacgaacattagttcaaggtttacaagggagaaattatgaatctaggttttggaccaccca |
14873118 |
T |
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| Q |
136 |
tagtaggttggttgatgttgttcttaagcacactatctaactctttaacgaacttctccatggcttgagctggtaaacaaagtggtataaccaaaccttc |
235 |
Q |
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| T |
14873119 |
tagtaggttggttaattttgttcttaagcacaccatccaactctttaatgaacctctccatggctttagttggcaaacaaactggtataaccaaaccttc |
14873218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 136 - 234
Target Start/End: Original strand, 14877850 - 14877948
Alignment:
| Q |
136 |
tagtaggttggttgatgttgttcttaagcacactatctaactctttaacgaacttctccatggcttgagctggtaaacaaagtggtataaccaaacctt |
234 |
Q |
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| T |
14877850 |
tagtaggctggttaatgttgttcttaagaacactatccaactctttaaccaacctctccatgacttgagttggcaaaaaaactggtataaccaaacctt |
14877948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 172
Target Start/End: Original strand, 14872226 - 14872310
Alignment:
| Q |
88 |
ttaaggtctacaaggaagaaataatgaaactaggttttggaccaccaatagtaggttggttgatgttgttcttaagcacactatc |
172 |
Q |
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| T |
14872226 |
ttaaggtttacaatgaagaaataacgagactaggtttcggaccatccttagtaggttggctaatgttgttcttaagcacattatc |
14872310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 237
Target Start/End: Original strand, 14786016 - 14786096
Alignment:
| Q |
157 |
tcttaagcacactatctaactctttaacgaacttctccatggcttgagctggtaaacaaagtggtataaccaaaccttcct |
237 |
Q |
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| T |
14786016 |
tcttaagcacactatccatttctttaacaaacctctccatgacttgatttggaaaataaaatggtataaccaaaccttcct |
14786096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 237
Target Start/End: Original strand, 83863 - 84011
Alignment:
| Q |
89 |
taaggtctacaaggaagaaataatgaaactaggttttggaccaccaatagtaggttggttgatgttgttcttaagcacactatctaactctttaacgaac |
188 |
Q |
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| T |
83863 |
taaggactacaacgaagaattaatgattccagattttctatcacccatagtaggcgagttaatgttgttcttaagaactttatccaactctttaaccaac |
83962 |
T |
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| Q |
189 |
ttctccatggcttgagctggtaaacaaagtggtataaccaaaccttcct |
237 |
Q |
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| T |
83963 |
ctctcgatgacttgagttggaaaaaaaactggtataacaaaaccttcct |
84011 |
T |
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