View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20966_low_30 (Length: 252)
Name: NF20966_low_30
Description: NF20966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20966_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 4885330 - 4885090
Alignment:
| Q |
1 |
tcagtggcagcatcaaagcaagtgaaatcatgaaaacatacccaaaacatgttctcaagaaaccttcttcaccttcaacacaagatggcggagttgttcc |
100 |
Q |
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| T |
4885330 |
tcagtggcagcatcaaagcaagtgaaatcatgaaaacatacccaaaacatgttctcaagaaaccttcttcaccttcaacacaagatggcggtgttgttcc |
4885231 |
T |
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| Q |
101 |
taagatcgttgttgtccctcccgatgctgatcttcaacgcggtaagatttacttcctcatgcctctccctacaccgccaccaccggataaaaataatcac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4885230 |
taagatcgttgttgtccctcccgatgctgatcttcaacgcggtaagatttacttcctcatgcctctccctacgccgccaccaccggataaaaataatcac |
4885131 |
T |
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| Q |
201 |
cgtcatagcaaaaactcgtcggtaagaaagaaaagaaaaga |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
4885130 |
cgtcatagcaaaaactcgtcggtaagaaagaaaagaaaaga |
4885090 |
T |
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