View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20966_low_36 (Length: 245)
Name: NF20966_low_36
Description: NF20966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20966_low_36 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 12 - 234
Target Start/End: Complemental strand, 26074150 - 26073928
Alignment:
| Q |
12 |
gttgttgttattattattagcaaggtctaagtgtaaaggttttgtcaaaggaaaattctgatattaactaactaatatggttgagtttggtatttatagg |
111 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26074150 |
gttgttattattattattagcaaggtctaagtgtaaaggttttgtcaaaggaaaattctgatattaactaactaatatggttgagtttggtatttatagg |
26074051 |
T |
|
| Q |
112 |
tgcattttgaaggaaaagtgggagatattactataaatggaatgaattattcattgaaacaacttcattggcatgcacctgcagagcacatggctcatgg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
26074050 |
tgcattttgaaggaaaagtgggagatattaatataaatggaatgaattattcattgaaacaacttcattggcatgcacctgcagagcacagggctcatgg |
26073951 |
T |
|
| Q |
212 |
tcgtttgtaagttccctctctct |
234 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
26073950 |
tcgtttgtaagttccctctctct |
26073928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 49 - 234
Target Start/End: Complemental strand, 26093786 - 26093601
Alignment:
| Q |
49 |
ggttttgtcaaaggaaaattctgatattaactaactaatatggttgagtttggtatttataggtgcattttgaaggaaaagtgggagatattactataaa |
148 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
26093786 |
ggttttgtcaaaggaaaattctgatatcaactaactaatattgttgagtttggtatctataggtgcattttgaaggaaaagtgggcgatattaatataaa |
26093687 |
T |
|
| Q |
149 |
tggaatgaattattcattgaaacaacttcattggcatgcacctgcagagcacatggctcatggtcgtttgtaagttccctctctct |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26093686 |
tggaatgaattattcattgaaacaacttcattggcatgcacctgcagagcacagggctcatggtcgtttgtaagttccctctctct |
26093601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 81 - 228
Target Start/End: Complemental strand, 26105163 - 26105015
Alignment:
| Q |
81 |
aactaatatggttgagtttggtatt-tataggtgcattttgaaggaaaagtgggagatattactataaatggaatgaattattcattgaaacaacttcat |
179 |
Q |
| |
|
|||| ||||||||||||||| || ||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
26105163 |
aactgatatggttgagtttgttaaaatataggtacattttgaaggtaaagtgggagatattaacataaatggaatgaattattcattgagacaacttcac |
26105064 |
T |
|
| Q |
180 |
tggcatgcacctgcagagcacatggctcatggtcgtttgtaagttccct |
228 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
26105063 |
tggcatgcacctgcagagcacagggctcatggtcgtttgtaagtcccct |
26105015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University