View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20966_low_39 (Length: 237)
Name: NF20966_low_39
Description: NF20966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20966_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 233
Target Start/End: Complemental strand, 29788609 - 29788392
Alignment:
| Q |
16 |
caaatttcagagagttttctatggtgaaagtggtgtgaaaccaagtctaagcttgctctattattgcttcaacctaagtaattcgtaaacctctgagcta |
115 |
Q |
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| T |
29788609 |
caaatttcagagagttttctatggtgaaagtggtgtgaaaccaagtctaagcttgctcaattattgcttcagcctaagtaattcgtaaacctctgagcta |
29788510 |
T |
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| Q |
116 |
taaaacattaagattggtttcaacactatatcatccaagttctacaaagaaaagaacaaagtttaattccttgggttgttaccatcgtagccatccattg |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
29788509 |
taaaacattaagattggtttcaacactatatcatccaagttgtacaaagaaaagaacaaagtttaattccttgggttgttacggtcgtagccatacattg |
29788410 |
T |
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| Q |
216 |
cggttggtcgtaacaact |
233 |
Q |
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|||||||||||||||||| |
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| T |
29788409 |
cggttggtcgtaacaact |
29788392 |
T |
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