View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20966_low_44 (Length: 220)
Name: NF20966_low_44
Description: NF20966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20966_low_44 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 52953903 - 52953709
Alignment:
| Q |
18 |
aaattcattgaaaggagcatcaatattaagagtactagtaacaattgtaacattcctttcagccattacagcagcaaaagatccagaaccaattccaata |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52953903 |
aaattcattgaaaggagcatcaatattaagagtactagtaacaattgtaacattcctttcagccattacagcagcaaaagatccagaaccaattccaata |
52953804 |
T |
|
| Q |
118 |
tcaaatcctattctaattccaccatttcccaatgccaaaacatcatcaacaagaaaatcattcttacttctagacttaacaaacctttgcttctc |
212 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
52953803 |
tcaaatcctattctaattccaccatttcctaatgccaaaacatcatcaacaagaaaatcattcttacttctagacttaacaaacctttgattctc |
52953709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 31673916 - 31673722
Alignment:
| Q |
18 |
aaattcattgaaaggagcatcaatattaagagtactagtaacaattgtaacattcctttcagccattacagcagcaaaagatccagaaccaattccaata |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31673916 |
aaattcattgaaaggagcatcaatattaagagtactagtaacaattgtaacattcctttcagccattacagcagcaaaagatccagaaccaattccaata |
31673817 |
T |
|
| Q |
118 |
tcaaatcctattctaattccaccatttcccaatgccaaaacatcatcaacaagaaaatcattcttacttctagacttaacaaacctttgcttctc |
212 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31673816 |
tcaaatcctattctaattccaccatttcctaatgccaaaacatcagcaacaagaaaatcattcttacttctagacttaacaaacctttgattctc |
31673722 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 31903621 - 31903817
Alignment:
| Q |
18 |
aaattcattgaaaggagcatcaatattaagagta--ctagtaacaattgtaacattcctttcagccattacagcagcaaaagatccagaaccaattccaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31903621 |
aaattcattgaaaggagcatcaatattaagagtatactagtaacaattgtaacattcctttcagccattacagcagcaaaagatccagaaccaattccaa |
31903720 |
T |
|
| Q |
116 |
tatcaaatcctattctaattccaccatttcccaatgccaaaacatcatcaacaagaaaatcattcttacttctagacttaacaaacctttgcttctc |
212 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31903721 |
tatcaaatcctattctaattccaccatttcctaatgccaaaacatcatcaacaagaaaatcattcttacttctagacttaacaaacctttgattctc |
31903817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 34 - 200
Target Start/End: Complemental strand, 28960175 - 28960009
Alignment:
| Q |
34 |
gcatcaatattaagagtactagtaacaattgtaacattcctttcagccattacagcagcaaaagatccagaaccaattccaatatcaaatcctattctaa |
133 |
Q |
| |
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||||||| |||||||||| | |||| | |||||||| || ||| ||||| |||||||||||| ||||||||| ||||||||||| || ||||||| |
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| T |
28960175 |
gcatcaacattaagagtattggtaatcacagtaacatttctatcaaacattatagcagcaaaagaaccagaaccaccaccaatatcaaaccccattctaa |
28960076 |
T |
|
| Q |
134 |
ttccaccatttcccaatgccaaaacatcatcaacaagaaaatcattcttacttctagacttaacaaa |
200 |
Q |
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||||||||||||| ||||| |||||||||||||| | ||||||||| |||||| | ||||| ||||| |
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|
| T |
28960075 |
ttccaccatttcctaatgctaaaacatcatcaaccaaaaaatcatttttactttttgacttcacaaa |
28960009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 34 - 200
Target Start/End: Complemental strand, 7760761 - 7760595
Alignment:
| Q |
34 |
gcatcaatattaagagtactagtaacaattgtaacattcctttcagccattacagcagcaaaagatccagaaccaattccaatatcaaatcctattctaa |
133 |
Q |
| |
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||||||| |||||||||| | |||| | |||||||| || ||| |||| |||||||||||| ||||||||| ||||||||||| || ||||||| |
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| T |
7760761 |
gcatcaacattaagagtattggtaatcacagtaacatttctatcaaacattctagcagcaaaagaaccagaaccaccaccaatatcaaaccccattctaa |
7760662 |
T |
|
| Q |
134 |
ttccaccatttcccaatgccaaaacatcatcaacaagaaaatcattcttacttctagacttaacaaa |
200 |
Q |
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||||||||||||| ||||| |||||||||||||| | ||||||||| |||||| | ||||| ||||| |
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| T |
7760661 |
ttccaccatttcctaatgctaaaacatcatcaaccaaaaaatcatttttactttttgacttcacaaa |
7760595 |
T |
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