View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20966_low_7 (Length: 404)
Name: NF20966_low_7
Description: NF20966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20966_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-137; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 98 - 389
Target Start/End: Complemental strand, 31131916 - 31131625
Alignment:
| Q |
98 |
gtggcgagcccccttacttcagcgacagcttctttcaaccgtcgcttggttccaatgtttaggaattttttcactttccataaaaatggaacagcagcgt |
197 |
Q |
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| T |
31131916 |
gtggcgagcccccttacttcagcgacagcttctttcaaccgtcgctcgggtccaatgtttaggaattttttcactttccataaaaatggaacatcagcgt |
31131817 |
T |
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| Q |
198 |
ttatcctgtcgccgctgattcgtgtgctatcgtcaaaagctttcacaaacgcgatttcgggaagagaagggaggagatactccgggtcgaatccaaatgc |
297 |
Q |
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| T |
31131816 |
ttatcctgtcgccgctgattcgtgtgctatcgtcaaaagctttgacaaacgcgatttcgggaagagaagggatgagatattccggatcgaatccaaatgt |
31131717 |
T |
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| Q |
298 |
aattatgcaaatattatcaaacgtaaaacgttggagaatatcttgaaaatcagggagaatcatttggtttttggaggcttcatggagaatag |
389 |
Q |
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| T |
31131716 |
gattatgcaaatattatcaaacgtaaaacgttggagaatatcttgaaaatcagggaggatcatttagtttttggaggcttcatggagaatag |
31131625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 98 - 357
Target Start/End: Complemental strand, 31127208 - 31126949
Alignment:
| Q |
98 |
gtggcgagcccccttacttcagcgacagcttctttcaaccgtcgcttggttccaatgtttaggaattttttcactttccataaaaatggaacagcagcgt |
197 |
Q |
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| T |
31127208 |
gtggcgagtcctcttacttcagcagcagcttcttttaaccgtcgctctgatccaacatttaatattttcttcactttccatagaaatggaatcgctgcat |
31127109 |
T |
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| Q |
198 |
ttatcctgtcgccgctgattcgtgtgctatcgtcaaaagctttcacaaacgcgatttcgggaagagaagggaggagatactccgggtcgaatccaaatgc |
297 |
Q |
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| T |
31127108 |
ttaacctctcactgctgattcgtgagctatcatcaaaggctttaacaaacgctgtttcgggaagagaagggaggagatactccggatcaaatccaaacgc |
31127009 |
T |
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| Q |
298 |
aattatgcaaatattatcaaacgtaaaacgttggagaatatcttgaaaatcagggagaat |
357 |
Q |
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| T |
31127008 |
aattatgcaaatattatcaaacgtgaaacgttggagaatatcttgaaaattagcgagaat |
31126949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 110 - 378
Target Start/End: Complemental strand, 31077878 - 31077610
Alignment:
| Q |
110 |
cttacttcagcgacagcttctttcaaccgtcgcttggttccaatgtttaggaattttttcactttccataaaaatggaacagcagcgtttatcctgtcgc |
209 |
Q |
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| T |
31077878 |
cttacttcagcgacggcttctttcaatcgtcgctcgatccctatgtttaatattttcttcactttccatatcaatggaatcgcagcgttaaatctcacac |
31077779 |
T |
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| Q |
210 |
cgctgattcgtgtgctatcgtcaaaagctttcacaaacgcgatttcgggaagagaagggaggagatactccgggtcgaatccaaatgcaattatgcaaat |
309 |
Q |
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| T |
31077778 |
tgctaattagtgagctatcgtcaaaggcttttacaaacatggttttgggaagagaagaatgtaagtactccggatcgaatccaaacgcgattctgcagat |
31077679 |
T |
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| Q |
310 |
attatcaaacgtaaaacgttggagaatatcttgaaaatcagggagaatcatttggtttttggaggcttc |
378 |
Q |
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| T |
31077678 |
actatcgaacgtaaaacgttggaggatatcttgaaaatcaagcagaaccgtttggtttttggaagcttc |
31077610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 31132001 - 31131961
Alignment:
| Q |
13 |
agaacttaaaaatcgcgacaaaagatccaccgattccaagg |
53 |
Q |
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| T |
31132001 |
agaacttaaaaatcgcgacaaaatatccaccgattccaagg |
31131961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 218
Target Start/End: Complemental strand, 31128888 - 31128768
Alignment:
| Q |
98 |
gtggcgagcccccttacttcagcgacagcttctttcaaccgtcgcttggttccaatgtttaggaattttttcactttccataaaaatggaacagcagcgt |
197 |
Q |
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|||||||| || ||||||||| |||| |||||||| | |||| ||||| ||||| |||| | ||| ||||||||||||| |||||||| ||| | | |
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| T |
31128888 |
gtggcgagtcctcttacttcaacgacggcttcttttagccgtttcttggatccaacatttaatattttcttcactttccatagaaatggaatggcatcat |
31128789 |
T |
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| Q |
198 |
ttatcctgtcgccgctgattc |
218 |
Q |
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| T |
31128788 |
ttaacctctcgctgctgattc |
31128768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 349
Target Start/End: Complemental strand, 38655148 - 38655083
Alignment:
| Q |
284 |
tcgaatccaaatgcaattatgcaaatattatcaaacgtaaaacgttggagaatatcttgaaaatca |
349 |
Q |
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| T |
38655148 |
tcgaaaccaaacgcgattttgcagatattgtcaaacgtgaaacgttggagaatgtcttggaaatca |
38655083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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