View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20966_low_8 (Length: 392)

Name: NF20966_low_8
Description: NF20966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20966_low_8
NF20966_low_8
[»] chr1 (3 HSPs)
chr1 (66-392)||(11405025-11405353)
chr1 (96-174)||(2733503-2733581)
chr1 (7-39)||(11405378-11405410)
[»] scaffold0330 (1 HSPs)
scaffold0330 (67-202)||(14145-14277)
[»] chr7 (3 HSPs)
chr7 (67-193)||(22952756-22952881)
chr7 (73-202)||(30057927-30058055)
chr7 (159-216)||(23313255-23313312)
[»] scaffold1657 (1 HSPs)
scaffold1657 (70-202)||(240-372)
[»] chr8 (3 HSPs)
chr8 (154-206)||(3604672-3604724)
chr8 (157-206)||(587621-587670)
chr8 (157-206)||(626252-626301)
[»] chr6 (6 HSPs)
chr6 (157-216)||(20189181-20189240)
chr6 (157-216)||(22146751-22146810)
chr6 (163-206)||(28961026-28961069)
chr6 (157-206)||(9313547-9313596)
chr6 (157-198)||(16883867-16883908)
chr6 (157-202)||(28118141-28118186)
[»] chr5 (1 HSPs)
chr5 (157-202)||(18239282-18239327)


Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 66 - 392
Target Start/End: Complemental strand, 11405353 - 11405025
Alignment:
Q  66 gaactcaaatatatgcactaaataccccatatttgttaaattcttattataattaatttgtcaagttaagattaaaataatcccaacagagacgaactta 165  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  11405353 gaactcaaatatatgcactaaataccccatatttgttaaatttttattataattaatttgtcaagttaagattaaaataatccctacagagacgaagtta 11405254  T
Q  166 taaattttaatatttcgatacatttttaatatacttgttaatagtcaatcacatacatgtacagagagctgtcttgagagtctaaaatcaaataatctta 265  Q
    | ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||    
T  11405253 ttaattttaatatttcgatacatttttaatatatttgtcaatagtcaatcacatacatgtaaagatagctgttttgagagtctaaaatcaaataatctta 11405154  T
Q  266 atattacttgtattagatggatgaaatctaaacnnnnnnnnnncttgtacagagctgaaaaccaaaaat-ggatggca-ct---aattatttgcatgtta 360  Q
    ||||||||||||||||| |||||||||||               ||||| ||||||||||||||||||| |||||  | ||    |||||||||||||||    
T  11405153 atattacttgtattagagggatgaaatct---ttttttttttttttgtatagagctgaaaaccaaaaatgggatgaaatcttaatattatttgcatgtta 11405057  T
Q  361 ttcttttgtaattttatctgatcaatttttct 392  Q
    ||||||||||||||||||||||||||||||||    
T  11405056 ttcttttgtaattttatctgatcaatttttct 11405025  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 96 - 174
Target Start/End: Complemental strand, 2733581 - 2733503
Alignment:
Q  96 atttgttaaattcttattataattaatttgtcaagttaagattaaaataatcccaacagagacgaacttataaatttta 174  Q
    ||||||||||| |||||||||||||| || ||||||| ||||| |||||||| |    |||||||||||||||||||||    
T  2733581 atttgttaaatccttattataattaaattttcaagttgagattgaaataatcactgtggagacgaacttataaatttta 2733503  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 39
Target Start/End: Complemental strand, 11405410 - 11405378
Alignment:
Q  7 atgaacactttaatttatgatgttttccacaca 39  Q
    |||||||||||||||| ||||||||||||||||    
T  11405410 atgaacactttaatttctgatgttttccacaca 11405378  T

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Target: scaffold0330 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 67 - 202
Target Start/End: Original strand, 14145 - 14277
Alignment:
Q  67 aactcaaatatatgcactaaataccccatatttgttaaattcttattataattaatttgtcaagttaagattaaaataatcccaacagagacgaacttat 166  Q
    |||| |||||||||| ||| |||||||||  ||||||||| |||||||||||||| ||   | ||| ||||||||| |||||   | ||||| |||||||    
T  14145 aactgaaatatatgctctacataccccat--ttgttaaat-cttattataattaaatttctacgttgagattaaaacaatccatgcggagacaaacttat 14241  T
Q  167 aaattttaatatttcgatacatttttaatatacttg 202  Q
    |||| ||| || ||||||||||||||| ||||||||    
T  14242 aaatcttattacttcgatacatttttagtatacttg 14277  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 67 - 193
Target Start/End: Original strand, 22952756 - 22952881
Alignment:
Q  67 aactcaaatatatgcactaaataccccatatttgttaaattcttattataattaatttgtcaagttaagattaaaataatcccaacagagacgaacttat 166  Q
    |||||||||||||||  |  |||||| | ||||||||||| |||||||||||||| |||||||||| ||||| ||| |||||     ||| | |||||||    
T  22952756 aactcaaatatatgctttgcatacccta-atttgttaaatccttattataattaaattgtcaagtttagattgaaacaatccatgtggaggcaaacttat 22952854  T
Q  167 aaattttaatatttcgatacattttta 193  Q
    |||||||| || |||||| ||||||||    
T  22952855 aaattttattacttcgatgcattttta 22952881  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 202
Target Start/End: Complemental strand, 30058055 - 30057927
Alignment:
Q  73 aatatatgcactaaataccccatatttgttaaattcttattataattaatttgtcaagttaagattaaaataatcccaacagagacgaacttataaattt 172  Q
    ||||||||| ||| ||||||  |||||||||||| || ||||||||||| ||||| |||| ||||| ||| |||||  |  || |||| |||||||| ||    
T  30058055 aatatatgctctacatacccgttatttgttaaatcctaattataattaaattgtcgagttgagattgaaacaatcctcatggaaacgatcttataaa-tt 30057957  T
Q  173 taatatttcgatacatttttaatatacttg 202  Q
    || || |||||| ||||||||||| |||||    
T  30057956 tactacttcgatgcatttttaatacacttg 30057927  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 216
Target Start/End: Complemental strand, 23313312 - 23313255
Alignment:
Q  159 gaacttataaattttaatatttcgatacatttttaatatacttgttaatagtcaatca 216  Q
    |||||||||||||||| |||||||||| ||||||| || ||||| ||| |||| ||||    
T  23313312 gaacttataaattttattatttcgatatatttttagtacacttgctaaaagtctatca 23313255  T

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Target: scaffold1657 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold1657
Description:

Target: scaffold1657; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 70 - 202
Target Start/End: Complemental strand, 372 - 240
Alignment:
Q  70 tcaaatatatgcactaaataccccatatttgttaaattcttattataattaatttgtcaagttaagattaaaataatcccaacagagacgaacttataaa 169  Q
    |||||||||| | ||| ||||||  ||||| |||||| |||||||||||||| ||  | |||| ||||| ||| ||||      ||||||||||||||||    
T  372 tcaaatatatcctctacatacccgctattttttaaatccttattataattaaattaccgagttgagattgaaacaatctttgtggagacgaacttataaa 273  T
Q  170 ttttaatatttcgatacatttttaatatacttg 202  Q
    ||||| || |||||| ||||||||||| |||||    
T  272 ttttattacttcgatgcatttttaatacacttg 240  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 206
Target Start/End: Complemental strand, 3604724 - 3604672
Alignment:
Q  154 gagacgaacttataaattttaatatttcgatacatttttaatatacttgttaa 206  Q
    |||| |||||||||||||||| ||||||||| |||||||| || |||||||||    
T  3604724 gagatgaacttataaattttattatttcgatgcatttttagtaaacttgttaa 3604672  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 206
Target Start/End: Original strand, 587621 - 587670
Alignment:
Q  157 acgaacttataaattttaatatttcgatacatttttaatatacttgttaa 206  Q
    |||||||||||||||||| || |||| || |||||||||| |||||||||    
T  587621 acgaacttataaattttattacttcgttatatttttaatacacttgttaa 587670  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 206
Target Start/End: Complemental strand, 626301 - 626252
Alignment:
Q  157 acgaacttataaattttaatatttcgatacatttttaatatacttgttaa 206  Q
    |||||||||||||||||| || |||| || |||||||||| |||||||||    
T  626301 acgaacttataaattttattacttcgttatatttttaatacacttgttaa 626252  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 20189240 - 20189181
Alignment:
Q  157 acgaacttataaattttaatatttcgatacatttttaatatacttgttaatagtcaatca 216  Q
    |||||||||||||||||| || ||||||| |||||||||| ||||| ||| |||| ||||    
T  20189240 acgaacttataaattttattacttcgatatatttttaatacacttgctaaaagtctatca 20189181  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 157 - 216
Target Start/End: Original strand, 22146751 - 22146810
Alignment:
Q  157 acgaacttataaattttaatatttcgatacatttttaatatacttgttaatagtcaatca 216  Q
    |||||||||||||||||| || ||||||| |||||||||| ||||| ||| |||| ||||    
T  22146751 acgaacttataaattttattacttcgatatatttttaatacacttgctaaaagtctatca 22146810  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 163 - 206
Target Start/End: Original strand, 28961026 - 28961069
Alignment:
Q  163 ttataaattttaatatttcgatacatttttaatatacttgttaa 206  Q
    |||||||||||| |||||||||||| ||||| ||||||||||||    
T  28961026 ttataaattttattatttcgatacaattttagtatacttgttaa 28961069  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 206
Target Start/End: Complemental strand, 9313596 - 9313547
Alignment:
Q  157 acgaacttataaattttaatatttcgatacatttttaatatacttgttaa 206  Q
    |||||||||||||||||| || ||||||| ||||||| || |||||||||    
T  9313596 acgaacttataaattttattacttcgatatatttttagtacacttgttaa 9313547  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 198
Target Start/End: Original strand, 16883867 - 16883908
Alignment:
Q  157 acgaacttataaattttaatatttcgatacatttttaatata 198  Q
    |||||||||||||||||| || ||||||| ||||||||||||    
T  16883867 acgaacttataaattttattacttcgatatatttttaatata 16883908  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 202
Target Start/End: Original strand, 28118141 - 28118186
Alignment:
Q  157 acgaacttataaattttaatatttcgatacatttttaatatacttg 202  Q
    |||||||||||||||||| || ||||||| |||||||||| |||||    
T  28118141 acgaacttataaattttattacttcgatatatttttaatacacttg 28118186  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 202
Target Start/End: Complemental strand, 18239327 - 18239282
Alignment:
Q  157 acgaacttataaattttaatatttcgatacatttttaatatacttg 202  Q
    |||||||||||||||||| || |||||| ||||||||||| |||||    
T  18239327 acgaacttataaattttattacttcgattcatttttaatacacttg 18239282  T

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