View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20967_high_1 (Length: 807)

Name: NF20967_high_1
Description: NF20967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20967_high_1
NF20967_high_1
[»] chr7 (9 HSPs)
chr7 (19-415)||(43927994-43928390)
chr7 (510-797)||(43928488-43928775)
chr7 (509-797)||(45162001-45162292)
chr7 (509-797)||(29188444-29188734)
chr7 (509-797)||(25599054-25599333)
chr7 (554-769)||(21156741-21156956)
chr7 (509-760)||(3688416-3688662)
chr7 (509-589)||(19067669-19067749)
chr7 (252-370)||(43940139-43940257)
[»] chr4 (3 HSPs)
chr4 (510-797)||(24008402-24008692)
chr4 (712-797)||(52107555-52107640)
chr4 (509-661)||(5046017-5046169)
[»] chr6 (2 HSPs)
chr6 (511-786)||(19311035-19311311)
chr6 (509-588)||(19654002-19654081)
[»] chr2 (4 HSPs)
chr2 (555-791)||(33629183-33629419)
chr2 (625-797)||(23343973-23344145)
chr2 (509-588)||(23343812-23343891)
chr2 (597-679)||(36237753-36237836)
[»] chr8 (7 HSPs)
chr8 (511-790)||(42007545-42007822)
chr8 (512-721)||(25929236-25929445)
chr8 (563-797)||(26395135-26395356)
chr8 (509-760)||(17725427-17725673)
chr8 (510-679)||(28930705-28930874)
chr8 (509-589)||(3418357-3418437)
chr8 (532-574)||(26395493-26395535)
[»] chr1 (5 HSPs)
chr1 (538-655)||(4134668-4134785)
chr1 (509-689)||(4433121-4433301)
chr1 (34-103)||(15608047-15608116)
chr1 (509-589)||(34309170-34309250)
chr1 (509-588)||(23026615-23026694)
[»] chr3 (3 HSPs)
chr3 (509-689)||(13476234-13476414)
chr3 (509-679)||(45081252-45081423)
chr3 (597-679)||(46150580-46150662)
[»] chr5 (1 HSPs)
chr5 (548-634)||(22212873-22212959)


Alignment Details
Target: chr7 (Bit Score: 385; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 19 - 415
Target Start/End: Original strand, 43927994 - 43928390
Alignment:
Q  19 tcaccactagctacaaccaaaaaccttccttcatattcctcaacctcaccagattccttattcttagccttcaccttccatttctcagaaccttcatcat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43927994 tcaccactagctacaaccaaaaaccttccttcatattcctcaacctcaccagattccttattcttagccttcaccttccatttctcagaaccttcatcat 43928093  T
Q  119 actctgcattctcaactgttctgtgatacagaggattgattttgaagtgtgaaacatagtcttctaagtattttaaaaacttatctttaggaatgtatga 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  43928094 actctgcattctcaactgttctgtgatacagaggattgattttgaagtgtgaaacatagtcctctaagtattgtaaaaacttatctttaggaatgtatga 43928193  T
Q  219 tggaaaagaaggtggaaatggtttgtgaggaagctcacaaaattgttttttgaggtgaagatgaagacgatcgtatgaatattttttccatagtgaagca 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  43928194 tggaaaagaaggtggaaatggtttgtgaggaagctcacaaaattgttttttgaggtgaagatgaagacgatcatatgaatattttttccatagtgaagca 43928293  T
Q  319 aaacaattttctctttcgaggattatataaggaatggattggtttcttaagcttgctgctactgatagaccagaagggcctgctccaacaactatca 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43928294 aaacaattttctctttcgaggattatataaggaatggattggtttcttaagcttgctgctactgatagaccagaagggcctgctccaacaactatca 43928390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 510 - 797
Target Start/End: Original strand, 43928488 - 43928775
Alignment:
Q  510 cgttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatcannnnnnncaatcacacacta 609  Q
    |||||||||||||||| || | ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||        |||||||||||||    
T  43928488 cgttgacaccaaatctcaactattgatcttatttaatcaaaggttaataatagtgccacatttttatttattgtgtatcctttttttcaatcacacacta 43928587  T
Q  610 ttattgtttttaatgattacaaaacctcaattggaaacataatcctatcataattctccttattctcttgtctacaaaattgaaatactccatagttgaa 709  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  43928588 ttattgtttttaatgattacaaaacctcaattggaaacataatcctatcataattctccttattctcttgtctgcaaaattgaaatactccatagttgaa 43928687  T
Q  710 taattaaaatacttcaaagatattattgtttagaatgaattgaaaatattagttgttaaatgcaattccctctatgatctctgctcct 797  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||    
T  43928688 taattaaaatacttcaaagatattattgtttagaatgaattggaaatattagttgttaaatgcaattcactctatgatctcttctcct 43928775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 509 - 797
Target Start/End: Original strand, 45162001 - 45162292
Alignment:
Q  509 tcgttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatcannnnnnn---caatcacac 605  Q
    ||||||||||||||||| || ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||           |||||||||    
T  45162001 tcgttgacaccaaatctcaactgttgatcttatttaatcaaaggttaataatagtgccacatttttatttattgtgtatccttttttttttcaatcacac 45162100  T
Q  606 actattattgtttttaatgattacaaaacctcaattggaaacataatcctatcataattctccttattctcttgtctacaaaattgaaatactccatagt 705  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||    
T  45162101 actattattgtttttaatgattacaaaacctaaattggaaacataatcctatcataattctccttattctcttgtctgcaaaattgaaatattctatagt 45162200  T
Q  706 tgaataattaaaatacttcaaagatattattgtttagaatgaattgaaaatattagttgttaaatgcaattccctctatgatctctgctcct 797  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  45162201 tgaataattaaaatacttcaaagatattattgtttagaatgaattggaaatattagttgttaaatgcaattccctctatgatctcttctcct 45162292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 509 - 797
Target Start/End: Complemental strand, 29188734 - 29188444
Alignment:
Q  509 tcgttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatcannnnnnn--caatcacaca 606  Q
    ||||||||||||||||| || ||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||          ||||||||||    
T  29188734 tcgttgacaccaaatctcaactgttgatcttatttaatcaaaagttaataatagtgccacatttttatttattgtgtatcttttttttttcaatcacaca 29188635  T
Q  607 ctattattgtttttaatgattacaaaacctcaattggaaacataatcctatcataattctccttattctcttgtctacaaaattgaaatactccatagtt 706  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29188634 ctattattgtttttaatgattacaaaacctaaattggaaacataatcatatcataattctccttattctcttgtctgcaaaattgaaatactccatagtt 29188535  T
Q  707 gaataattaaaatacttcaaagatattattgtttagaatgaattgaaaatattagttgttaaatgcaattccctctatgatctctgctcct 797  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||| |||||    
T  29188534 gaataattaaaatacttcaaagatattattgtttaaaatgaattggaaatattagttgttaaatgcaatttcctctatgatctcttctcct 29188444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 170; E-Value: 8e-91
Query Start/End: Original strand, 509 - 797
Target Start/End: Original strand, 25599054 - 25599333
Alignment:
Q  509 tcgttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatcannnnnnncaatcacacact 608  Q
    ||||||||||||||||| ||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||        ||||||||||||    
T  25599054 tcgttgacaccaaatctcaatcgttgatcttatttaatcaaaggttaataatagtgccacatttttatttattgtgtatcctttttttcaatcacacact 25599153  T
Q  609 attattgtttttaatgattacaaaacctcaattggaaacataatcctatcataattctccttattctcttgtctacaaaa-ttgaaatactccatagttg 707  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  25599154 attattatttttaatgattacaaaacctaaattggaaacataatcctatcataattctccttattctcttgtctgcaaaatttgaaatactccatagttg 25599253  T
Q  708 aataattaaaatacttcaaagatattattgtttagaatgaattgaaaatattagttgttaaatgcaattccctctatgatctctgctcct 797  Q
    ||||||||||||||||| ||          ||| |||||||||| |||||||||||||||||||||||||| |||||||| ||| |||||    
T  25599254 aataattaaaatacttccaa----------ttttgaatgaattggaaatattagttgttaaatgcaattccttctatgatatcttctcct 25599333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 554 - 769
Target Start/End: Complemental strand, 21156956 - 21156741
Alignment:
Q  554 taataataatgccacatttttatttattgtgtatcannnnnnncaatcacacactattattgtttttaatgattacaaaacctcaattggaaacataatc 653  Q
    |||| ||| |||||||||||||||||  |||||||        ||||||||||| ||||||||||| |||||||||||||||  ||||| |||||| |||    
T  21156956 taattatagtgccacatttttatttacggtgtatcctttctttcaatcacacaccattattgttttcaatgattacaaaacccaaattgaaaacatgatc 21156857  T
Q  654 ctatcataattctccttattctcttgtctacaaaattgaaatactccatagttgaataattaaaatacttcaaagatattattgtttagaatgaattgaa 753  Q
      ||||| |  ||||||||||| |||| | ||||||| |||| |||||||  ||||||||||||||||||| |||||||||||| ||| |||||||||||    
T  21156856 ggatcatgaccctccttattctattgttttcaaaattaaaatgctccataactgaataattaaaatacttccaagatattattgcttataatgaattgaa 21156757  T
Q  754 aatattagttgttaaa 769  Q
    || |||||||| ||||    
T  21156756 aacattagttggtaaa 21156741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 509 - 760
Target Start/End: Original strand, 3688416 - 3688662
Alignment:
Q  509 tcgttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatcannnnnnncaatcacacact 608  Q
    |||||||||||||||||||    || || |||||| || |||||||||| ||| || ||| |||||||||||||||||||        ||||||||||||    
T  3688416 tcgttgacaccaaatcttatccatttattttatttgatcaaaggttaattatagtgacacgtttttatttattgtgtatcctttctttcaatcacacact 3688515  T
Q  609 attattgtttttaatgattacaaaacctcaattggaaacataatcctatcataattctccttattctcttgtctacaaaattgaaatactccatagttga 708  Q
    |||||||||||||||||||||||||||  || ||||||||  ||| |||||| || || ||| ||||||||||  |||| || ||||||||||||  | |    
T  3688516 attattgtttttaatgattacaaaacccaaactggaaacaagatcgtatcatgatcct-cttcttctcttgtc--caaagttaaaatactccataactaa 3688612  T
Q  709 ataattaaaatacttcaaagatattattgtttagaatgaattgaaaatatta 760  Q
    |||| ||| ||||||| |||||||||| ||||||||| ||||||||||||||    
T  3688613 ataa-taagatacttc-aagatattatcgtttagaattaattgaaaatatta 3688662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 509 - 589
Target Start/End: Original strand, 19067669 - 19067749
Alignment:
Q  509 tcgttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatca 589  Q
    ||||||||||||||||| ||  |||||| ||||||||| |||||  |||||||||||||||||| |||||||| |||||||    
T  19067669 tcgttgacaccaaatctcaaccgttgattttatttaatcaaaggccaataataatgccacatttctatttattatgtatca 19067749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 252 - 370
Target Start/End: Original strand, 43940139 - 43940257
Alignment:
Q  252 ctcacaaaattgttttttgaggtgaagatgaagacgatcgtatgaatattttttccatagtgaagcaaaacaattttctctttcgaggattatataagga 351  Q
    |||||||| ||||||| | || |||||||||| |||||| || |  || |||| |||||| ||||||||||| |||||||||||||| || ||  ||||     
T  43940139 ctcacaaagttgttttcttagatgaagatgaacacgatcataggtgtaattttgccatagagaagcaaaacagttttctctttcgagaatgatgaaaggt 43940238  T
Q  352 atggattggtttcttaagc 370  Q
    |||||||| ||| ||||||    
T  43940239 atggattgttttgttaagc 43940257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 510 - 797
Target Start/End: Original strand, 24008402 - 24008692
Alignment:
Q  510 cgttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatcannnnnnn---caatcacaca 606  Q
    |||||||||||||||| || ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||           ||||||||||    
T  24008402 cgttgacaccaaatctcaactgttgatcttatttaatcaaaggttaataatagtgccacatttttatttattgtgtatctttttttttttcaatcacaca 24008501  T
Q  607 ctattattgtttttaatgattacaaaacctcaattggaaacataatcctatcataattctccttattctcttgtctacaaaattgaaatactccatagtt 706  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  24008502 ctattattgtttttaatgattacaaaacctaaattggaaacataatcctatcataattctccttattctcttgtctgcaaaattgaaatactgcatagtt 24008601  T
Q  707 gaataattaaaatacttcaaagatattattgtttagaatgaattgaaaatattagttgttaaatgcaattccctctatgatctctgctcct 797  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  24008602 gaataattaaaatacttcaaagatattattgtttaaaatgaattggaaatattagttgttaaatgcaattccctctatgatctcttctcct 24008692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 712 - 797
Target Start/End: Complemental strand, 52107640 - 52107555
Alignment:
Q  712 attaaaatacttcaaagatattattgtttagaatgaattgaaaatattagttgttaaatgcaattccctctatgatctctgctcct 797  Q
    ||||||||||||| || |||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||| |||||    
T  52107640 attaaaatacttccaaaatattattgtttagaacgaattggaaatattagttgttaaatgcaattccctatatgatctcttctcct 52107555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 509 - 661
Target Start/End: Original strand, 5046017 - 5046169
Alignment:
Q  509 tcgttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatcannnnnnncaatcacacact 608  Q
    ||||||||||||||||| ||  ||| || ||||||||| ||||| ||||  || ||||| |||| | |||||||||||||          ||||||||||    
T  5046017 tcgttgacaccaaatctcaaccgtttattttatttaatcaaaggctaattttagtgccatatttctctttattgtgtatcctttcttgtgatcacacact 5046116  T
Q  609 attattgtttttaatgattacaaaacctcaattggaaacataatcctatcata 661  Q
    |||||||| ||||||||||| |||||   |||||||||||| ||| |||||||    
T  5046117 attattgtatttaatgattataaaactcaaattggaaacatgatcttatcata 5046169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 208; Significance: 1e-113; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 511 - 786
Target Start/End: Original strand, 19311035 - 19311311
Alignment:
Q  511 gttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatcannnnnnn-caatcacacacta 609  Q
    ||||||||||||||| || ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||         |||||||||||||    
T  19311035 gttgacaccaaatctcaactgttgatcttatttaatcaaaggttaataatagtgccacatttttatttattgtgtatccttttttttcaatcacacacta 19311134  T
Q  610 ttattgtttttaatgattacaaaacctcaattggaaacataatcctatcataattctccttattctcttgtctacaaaattgaaatactccatagttgaa 709  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  19311135 ttattgtttttaatgattacaaaacctaaattggaaacataatcctatcataattctcattattctcttgtctgcaaaattgaaatactccatagttgaa 19311234  T
Q  710 taattaaaatacttcaaagatattattgtttagaatgaattgaaaatattagttgttaaatgcaattccctctatga 786  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  19311235 taattaaaatacttcaaagatattattgtttagaaagaattggaaatattagttgttaaatgcaattccctctatga 19311311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 509 - 588
Target Start/End: Original strand, 19654002 - 19654081
Alignment:
Q  509 tcgttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatc 588  Q
    ||||||||||||||||||||  ||| || ||||||||| ||||| |||| ||||| ||||||||||||||||||||||||    
T  19654002 tcgttgacaccaaatcttaaccgtttattttatttaatcaaaggctaattataataccacatttttatttattgtgtatc 19654081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 176; Significance: 2e-94; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 555 - 791
Target Start/End: Complemental strand, 33629419 - 33629183
Alignment:
Q  555 aataataatgccacatttttatttattgtgtatcannnnnnncaatcacacactattattgtttttaatgattacaaaacctcaattggaaacataatcc 654  Q
    ||||||| || |||||||||||||||||||||||        |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  33629419 aataatagtgtcacatttttatttattgtgtatccttttattcaatcacacactattattatttttaatgattacaaaacctaaattggaaacataatcc 33629320  T
Q  655 tatcataattctccttattctcttgtctacaaaattgaaatactccatagttgaataattaaaatacttcaaagatattattgtttagaatgaattgaaa 754  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||    
T  33629319 tatcataattctccttattctcttgtctgcaaaattgaaataccccatagttgaataattaaaatacttccaagatattattgtttagaatgaattggaa 33629220  T
Q  755 atattagttgttaaatgcaattccctctatgatctct 791  Q
    ||||||||||||||||| |||||||||||||||||||    
T  33629219 atattagttgttaaatgaaattccctctatgatctct 33629183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 625 - 797
Target Start/End: Original strand, 23343973 - 23344145
Alignment:
Q  625 attacaaaacctcaattggaaacataatcctatcataattctccttattctcttgtctacaaaattgaaatactccatagttgaataattaaaatacttc 724  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |  ||||||||||||||||||||||||    
T  23343973 attacaaaacctaaattggaaacataatcctatcataattctctttattctcttgtctgcaaaattgaaatattttatagttgaataattaaaatacttc 23344072  T
Q  725 aaagatattattgtttagaatgaattgaaaatattagttgttaaatgcaattccctctatgatctctgctcct 797  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||| |||||    
T  23344073 aaagatattattgtttaaaatgaattggaaatattagttgttaaatgcaatttcctctatgatctcttctcct 23344145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 509 - 588
Target Start/End: Original strand, 23343812 - 23343891
Alignment:
Q  509 tcgttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatc 588  Q
    ||||||||| ||||||| || ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  23343812 tcgttgacatcaaatctcaactgttgatcttatttaatcaaaggttaataatagtgccacatttttatttattgtgtatc 23343891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 597 - 679
Target Start/End: Original strand, 36237753 - 36237836
Alignment:
Q  597 caatcacacactattattgtttttaatga-ttacaaaacctcaattggaaacataatcctatcataattctccttattctcttg 679  Q
    ||||||||||||||||||||||| ||||| ||||||||||  |||||||||||| ||| |||||| || || || |||||||||    
T  36237753 caatcacacactattattgttttcaatgatttacaaaaccgaaattggaaacatgatcatatcatgatcctactcattctcttg 36237836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 118; Significance: 9e-60; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 511 - 790
Target Start/End: Original strand, 42007545 - 42007822
Alignment:
Q  511 gttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatcannnnnnncaatcacacactat 610  Q
    ||||||||||||||| ||  ||| || ||||||||| || |||||||| || || ||| ||| ||||||||||||||||       |||||||||| |||    
T  42007545 gttgacaccaaatctcaaccgttaattttatttaatcaatggttaatagtagtgtcacgtttgtatttattgtgtatcatttttt-caatcacacattat 42007643  T
Q  611 tattgtttttaatgattacaaaacctcaattggaaacataatcctatcataattctccttattctcttgtctacaaaattgaaatactccatagttgaat 710  Q
    ||||| |||||||||||||||||| | |||||||||| || || ||||||||||||| ||||||||| || | ||||| | ||||||||||||  || ||    
T  42007644 tattgattttaatgattacaaaacttaaattggaaactta-tcgtatcataattctctttattctctggtttgcaaaaataaaatactccataactggat 42007742  T
Q  711 aattaaaatacttcaaagatattattgtttagaatgaattgaaaatattagttgttaaatgcaattccctctatgatctc 790  Q
    |||||||||||||| |||||||||||||||| |||||||  ||||||||||||| |||||||||||||||||||||||||    
T  42007743 aattaaaatacttccaagatattattgtttaaaatgaatgaaaaatattagttggtaaatgcaattccctctatgatctc 42007822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 512 - 721
Target Start/End: Complemental strand, 25929445 - 25929236
Alignment:
Q  512 ttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatcannnnnnncaatcacacactatt 611  Q
    |||||||||||||| || ||||| | ||||||||| |||||||||||||||| |||| |||||||||||||||||||        |||||||||||||||    
T  25929445 ttgacaccaaatctcaactgttgtttttatttaatcaaaggttaataataatcccacgtttttatttattgtgtatcttttttttcaatcacacactatt 25929346  T
Q  612 attgtttttaatgattacaaaacctcaattggaaacataatcctatcataattctccttattctcttgtctacaaaattgaaatactccatagttgaata 711  Q
    ||||||||||||||||||||||||  ||||| |||||| ||| |||||||||||| |||||||| |||||| ||||||| ||||||||||||  ||||||    
T  25929345 attgtttttaatgattacaaaacccaaattgaaaacatgatcatatcataattcttcttattcttttgtctgcaaaattaaaatactccataactgaata 25929246  T
Q  712 attaaaatac 721  Q
    ||||||||||    
T  25929245 attaaaatac 25929236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 563 - 797
Target Start/End: Complemental strand, 26395356 - 26395135
Alignment:
Q  563 tgccacatttttatttattgtgtatcannnnnnncaatcacacactattattgtttttaatgattacaaaacctcaattggaaacataatcctatcataa 662  Q
    ||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||   |||  ||||| |||||| ||||||||||||    
T  26395356 tgccacatttttatttattgtgtatctttttttt-aatcacacactattattgtttttaatgattaccgtacccaaattgaaaacatgatcctatcataa 26395258  T
Q  663 ttctccttattctcttgtctacaaaattgaaatactccatagttgaataattaaaatacttcaaagatattattgtttagaatgaattgaaaatattagt 762  Q
    |||||         |||||| ||||||||||||||||||||  | ||||||||||||||||  ||||||||||| |||||||||||||| |||||| |      
T  26395257 ttctc---------ttgtctgcaaaattgaaatactccataactaaataattaaaatacttgcaagatattattttttagaatgaattggaaatatca-- 26395169  T
Q  763 tgttaaatgcaattccctctatgatctctgctcct 797  Q
      ||||||||||||| ||||||||||||| |||||    
T  26395168 -attaaatgcaattctctctatgatctcttctcct 26395135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 509 - 760
Target Start/End: Complemental strand, 17725673 - 17725427
Alignment:
Q  509 tcgttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatcannnnnnncaatcacacact 608  Q
    |||||||||||||||| ||    || || |||||| || |||||||||| ||| || ||| |||||||||||||||||||        ||||||||||||    
T  17725673 tcgttgacaccaaatcctatccatttattttatttgatcaaaggttaattatagtgacacgtttttatttattgtgtatcctttctttcaatcacacact 17725574  T
Q  609 attattgtttttaatgattacaaaacctcaattggaaacataatcctatcataattctccttattctcttgtctacaaaattgaaatactccatagttga 708  Q
    |||||||||||||||||||||||||||  || ||||||||  ||| |||||| || || ||| ||||||||||  |||| || ||||||||||||  | |    
T  17725573 attattgtttttaatgattacaaaacccaaactggaaacaagatcgtatcatgatcct-cttcttctcttgtc--caaagttaaaatactccataaataa 17725477  T
Q  709 ataattaaaatacttcaaagatattattgtttagaatgaattgaaaatatta 760  Q
    |||| ||| ||||||| |||||||||| ||||||||| ||||||||||||||    
T  17725476 ataa-taagatacttc-aagatattatcgtttagaattaattgaaaatatta 17725427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 510 - 679
Target Start/End: Complemental strand, 28930874 - 28930705
Alignment:
Q  510 cgttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatcannnnnnncaatcacacacta 609  Q
    |||||||||||||||| |   |||||| | |||| || || |||||| |||| |||||||||||||||||||||||| |        |||||||||||||    
T  28930874 cgttgacaccaaatctcatccgttgat-taatttgatcaagggttaaaaatagtgccacatttttatttattgtgtacccttcttttcaatcacacacta 28930776  T
Q  610 ttattgtttttaatg-attacaaaacctcaattggaaacataatcctatcataattctccttattctcttg 679  Q
    ||||||||||||||| ||||||||||   |||||||||||| ||| |||||| || || || |||||||||    
T  28930775 ttattgtttttaatgaattacaaaactgaaattggaaacatgatcatatcatgatcctactcattctcttg 28930705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 509 - 589
Target Start/End: Complemental strand, 3418437 - 3418357
Alignment:
Q  509 tcgttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatca 589  Q
    ||||||||||||||  | ||  |||||| ||||||||| |||||  |||||||||||||||||| |||||||| |||||||    
T  3418437 tcgttgacaccaaacttcaaccgttgattttatttaatcaaaggccaataataatgccacatttctatttattatgtatca 3418357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 532 - 574
Target Start/End: Complemental strand, 26395535 - 26395493
Alignment:
Q  532 ttgatcttatttaatgaaaggttaataataatgccacattttt 574  Q
    ||||| ||||||||| |||||||||||||| ||||||||||||    
T  26395535 ttgattttatttaatcaaaggttaataatagtgccacattttt 26395493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 4e-28; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 538 - 655
Target Start/End: Complemental strand, 4134785 - 4134668
Alignment:
Q  538 ttatttaatgaaaggttaataataatgccacatttttatttattgtgtatcannnnnnncaatcacacactattattgtttttaatgattacaaaacctc 637  Q
    ||||| ||| |||||||||| ||| |||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||      
T  4134785 ttattaaatcaaaggttaattatagtgccacatttttatttattgtgtatcatttctttcaatcacacactattattgtttttaatgattacaaaaccca 4134686  T
Q  638 aattggaaacataatcct 655  Q
    |||| ||||||| |||||    
T  4134685 aattagaaacattatcct 4134668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 509 - 689
Target Start/End: Original strand, 4433121 - 4433301
Alignment:
Q  509 tcgttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatcannnnnnncaatcacacact 608  Q
    ||||||||||||||||| |   |||||| | |||| || |||||||||  ||| |||||||||||||||||||||| |||        ||||||||||||    
T  4433121 tcgttgacaccaaatctcatccgttgatttaatttgatcaaaggttaaatatagtgccacatttttatttattgtgcatcctttctttcaatcacacact 4433220  T
Q  609 attattgtttttaatgattacaaaacctcaattggaaacataatcctatcataattctccttattctcttgtctacaaaat 689  Q
    ||||||||||| ||||||||||||||   ||||||||| || ||| |||| | |||||||||||||| |||||| ||||||    
T  4433221 attattgttttaaatgattacaaaactcaaattggaaagatgatcgtatcttgattctccttattcttttgtctgcaaaat 4433301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 34 - 103
Target Start/End: Complemental strand, 15608116 - 15608047
Alignment:
Q  34 accaaaaaccttccttcatattcctcaacctcaccagattccttattcttagccttcaccttccatttct 103  Q
    |||||||||||||| |||||||||||||| |||||||| ||||||||| |||||||||| ||||||||||    
T  15608116 accaaaaaccttccatcatattcctcaacttcaccagaatccttattcatagccttcactttccatttct 15608047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 509 - 589
Target Start/End: Complemental strand, 34309250 - 34309170
Alignment:
Q  509 tcgttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatca 589  Q
    ||||||||||||||||| ||  |||||| ||||||||| |||||  |||||||||||||||||| |||||||| |||||||    
T  34309250 tcgttgacaccaaatctcaaccgttgattttatttaatcaaaggccaataataatgccacatttctatttattatgtatca 34309170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 509 - 588
Target Start/End: Original strand, 23026615 - 23026694
Alignment:
Q  509 tcgttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatc 588  Q
    ||||||||| ||||||| || | || || ||||||||| |||| ||||| ||| |||||| ||| |||||||||||||||    
T  23026615 tcgttgacatcaaatctcaactatttattttatttaatcaaagattaattatagtgccacgtttatatttattgtgtatc 23026694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 509 - 689
Target Start/End: Original strand, 13476234 - 13476414
Alignment:
Q  509 tcgttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatcannnnnnncaatcacacact 608  Q
    ||||||||||||||||| |   |||||| | |||| || |||||||||  ||| ||||||||||||||||||||||||||        ||| ||||||||    
T  13476234 tcgttgacaccaaatctcatccgttgatttaatttgatcaaaggttaaatatagtgccacatttttatttattgtgtatcctttctttcaaccacacact 13476333  T
Q  609 attattgtttttaatgattacaaaacctcaattggaaacataatcctatcataattctccttattctcttgtctacaaaat 689  Q
    ||||||||||| ||||||||||||||   ||||||||| || ||| |||| | |||||||||||||| |||||| ||||||    
T  13476334 attattgttttaaatgattacaaaactcaaattggaaagatgatcgtatcttgattctccttattcttttgtctgcaaaat 13476414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 509 - 679
Target Start/End: Complemental strand, 45081423 - 45081252
Alignment:
Q  509 tcgttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatcannnnnnncaatcacacact 608  Q
    ||||||||||||||||| ||   || || |||||| || ||||| |||  |||  ||||||||||| ||||||||||| |        |||||||||| |    
T  45081423 tcgttgacaccaaatctcaaccatttattttatttgatcaaaggctaaatatagagccacatttttttttattgtgtacccttcttttcaatcacacatt 45081324  T
Q  609 attattgtttttaatga-ttacaaaacctcaattggaaacataatcctatcataattctccttattctcttg 679  Q
    ||||||||||| ||||| ||||||||||  |||||||||||| ||| |||||| || || || |||||||||    
T  45081323 attattgttttcaatgatttacaaaaccgaaattggaaacatgatcatatcatgatcctactcattctcttg 45081252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 597 - 679
Target Start/End: Complemental strand, 46150662 - 46150580
Alignment:
Q  597 caatcacacactattattgtttttaatgatt-acaaaacctcaattggaaacataatcctatcataattctccttattctcttg 679  Q
    ||||||||||||||||||||||  ||||||| ||||||||  |||||||||||| ||| |||||| || || || |||||||||    
T  46150662 caatcacacactattattgtttc-aatgatttacaaaaccgaaattggaaacatgatcatatcatgatcctactcattctcttg 46150580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 548 - 634
Target Start/End: Complemental strand, 22212959 - 22212873
Alignment:
Q  548 aaaggttaataataatgccacatttttatttattgtgtatcannnnnnncaatcacacactattattgtttttaatgattacaaaac 634  Q
    |||||||||| |||||||||||||||||||||||||||||||       |||| |||||| ||||||||||||||||||||||||||    
T  22212959 aaaggttaattataatgccacatttttatttattgtgtatcatttctttcaattacacacgattattgtttttaatgattacaaaac 22212873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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