View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20967_high_2 (Length: 716)
Name: NF20967_high_2
Description: NF20967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20967_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 662; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 662; E-Value: 0
Query Start/End: Original strand, 1 - 702
Target Start/End: Original strand, 42520002 - 42520701
Alignment:
| Q |
1 |
ctcatgaagttccttctcgccactgctctttcggacaggctgtgcttaatggtaatttattgaaccttcgcttgtacttgctatactgtatgatatatgg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
42520002 |
ctcatgaagttccttctcgccactgctctttcggacaggctgtgcttaatggtaatttattgaaccttcgctt--acttgctatactgtatgatatatgg |
42520099 |
T |
|
| Q |
101 |
ctgaaaatgtgtttatataagagcagactcaatccatattcttagagggggaaaacagacaaggcccctctttgttacagattttgttcaatttttacca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42520100 |
ctgaaaatgtgtttatataagagcagactcaatccatattcttagagggggaaaacagacaaggcccctctttgttacagattttgttcaatttttacca |
42520199 |
T |
|
| Q |
201 |
agttattgaatatttttcctgattaactttatcatatttaaaaaacacctgtatgttaaaacttgagatatgctgatttgagaatatgtgcatttatgta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42520200 |
agttattgaatatttttcctgattaactttatcatatttaaaaaacacctgtatgttaaaacttgagatatgctgatttgagaatatgtgcatttatgta |
42520299 |
T |
|
| Q |
301 |
ttgacattacatacttgacaactaagcaatgcactgaaaaccacaaatttgtgtatgccttgttgttttggattttgcaggcataaatgtcctttgtgga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42520300 |
ttgacattacatacttgacaactaagcaatgcactgaaaaccacaaatttgtgtatgccttgttgttttggattttgcaggcataaatgtcctttgtgga |
42520399 |
T |
|
| Q |
401 |
gtaggaatcctttcaaccccttatgctgctaaagaaggtggatgggtaggactttccatcttgttcatttttggaattctttctttttatactggattgc |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42520400 |
gtaggaatcctttcaaccccttatgctgctaaagaaggtggatggctaggactttccatcttgttcatttttggaattctttctttttatactggattgc |
42520499 |
T |
|
| Q |
501 |
tcttgcgttcctgcttggacagtgaacctggtcttgaaacataccctgatattggccaagctgcttttggtactgccggacgaattgctatttcagtaag |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42520500 |
tcttgcgttcctgcttggacagtgaacctggtcttgaaacataccctgatattggccaagctgcttttggtactgccggacgaattgctatttcagtaag |
42520599 |
T |
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| Q |
601 |
tcgatcttcatgctcatctaaatactcttacttgcgatcttttccnnnnnnnattgcttgtgtttggtggtttgtgttggtatctaatctcaatttccta |
700 |
Q |
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| T |
42520600 |
tcgatcttcatgctcatctaaatactcttacttgtgatcttttcctttttttattgcttgtgtttggtggtttgtgttggtatctaatctcaatttccta |
42520699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 364 - 574
Target Start/End: Complemental strand, 19242327 - 19242117
Alignment:
| Q |
364 |
tgttttggattttgcaggcataaatgtcctttgtggagtaggaatcctttcaaccccttatgctgctaaagaaggtggatgggtaggactttccatcttg |
463 |
Q |
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|||||||| ||||||||||||||||| |||||||| || |||||||||||| |||||||||| ||||||||||| |||| | |||||| ||||| |
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| T |
19242327 |
tgttttggtttttgcaggcataaatgctctttgtggggttggaatcctttcagtcccttatgctctcaaagaaggtggttgggctgcactttcaatctta |
19242228 |
T |
|
| Q |
464 |
ttcatttttggaattctttctttttatactggattgctcttgcgttcctgcttggacagtgaacctggtcttgaaacataccctgatattggccaagctg |
563 |
Q |
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| || ||| | | |||| ||||| ||||| ||||| ||||||| |||||||||||| ||||||| |||||||| || || || ||||||||||||| |
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| T |
19242227 |
ctgatattttcagtattttccttttacactggcttgctgttgcgttattgcttggacagtcaacctggacttgaaacttatcccgacattggccaagctg |
19242128 |
T |
|
| Q |
564 |
cttttggtact |
574 |
Q |
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||||||||||| |
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|
| T |
19242127 |
cttttggtact |
19242117 |
T |
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