View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20967_high_21 (Length: 246)
Name: NF20967_high_21
Description: NF20967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20967_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 71 - 236
Target Start/End: Original strand, 45411278 - 45411442
Alignment:
| Q |
71 |
ttttttgaaatttgcattgcattaacttactttggaaattattttaacttgatgatgggtactttggtcatttttgtaaataatttctccacacaggann |
170 |
Q |
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| T |
45411278 |
tttttttaaatttgcattgcattaacttactttggaaattattttaacttgatgatgggtactttggtcatttttgtaaatagtttctccacacagga-- |
45411375 |
T |
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| Q |
171 |
nnnnnnnggtccatgact-ggctaccacatcagacatggtccccaccaagatcttccattttctgtg |
236 |
Q |
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| T |
45411376 |
tttttttggtccatgactgggctaccacatcagacatggtccccaccaagatcttccattttctgtg |
45411442 |
T |
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Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 45411186 - 45411262
Alignment:
| Q |
1 |
ttaggaaccaacttttccacttgttttcttcacatgtacaaaatgtctaaattggtcgcattgcattaacttttttga |
78 |
Q |
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| T |
45411186 |
ttaggaaccaacttttccacttgttttcttcacatgta-aaaatgtctaaattggtcgcattgcattaacttttttga |
45411262 |
T |
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