View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20967_high_5 (Length: 552)
Name: NF20967_high_5
Description: NF20967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20967_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 18 - 542
Target Start/End: Original strand, 45427983 - 45428507
Alignment:
| Q |
18 |
aatactataaagaagtctttgcagtaagtctatgcatattagtccacaatttgagtccaaggatttacttaaagttgcacgatagggatataaatagtta |
117 |
Q |
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| T |
45427983 |
aatactataaagaagtctttgcagtaagtctataaatattagtccacaatttgagtccaaggatttacttaaagttgcacgatagggatataaatagtta |
45428082 |
T |
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| Q |
118 |
atgacaaaaaacatcaatatttgtaggttcgttcagtttacttnnnnnnnnnnnnntatatcttgaccatatttgttttgctatttataggggaagattg |
217 |
Q |
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| T |
45428083 |
atgacaaaaaacatcaatatttgtaggttcgttcagtttacttaaaaacgaaaaaatatatcttgaccatatttgttttgctatttataggggaagattg |
45428182 |
T |
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| Q |
218 |
atatacatggggaggccagatgcacttcacactcacctttcgggatttggaaggcctgtacctgatggagaaaacaatattgagtatctcctagatgtta |
317 |
Q |
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| T |
45428183 |
atatacatggggaggccagatgcacttcacactcacctttcgggatttggaaggcctgtacctgatggagaaaacaatattgagtatctcctagatgtta |
45428282 |
T |
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| Q |
318 |
taactgaatacgatcaagcgacggttggacttgaccctcttgtccaataccaacatgatggccataaacctgacccagcagccatgacccctgttcctaa |
417 |
Q |
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| T |
45428283 |
taactgaatacgatcaagcgacggttggacttgaccctcttgtccaataccaacatgatggccataaacctgacccagcagccatgacccctgttcctaa |
45428382 |
T |
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| Q |
418 |
acctccaagaacaccttacagaaggaacaccccagcatctaaacacatgattagcctgcgcagccaaggatttactgctggtaccccacaacctgattct |
517 |
Q |
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| T |
45428383 |
acctccaagaacaccttacagaaggaacaccccagcatctaaacacatgattagcctgcgcagccaaggatttactgctggtaccccacaacctgattct |
45428482 |
T |
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| Q |
518 |
tcacagtttggccttgatgatgatg |
542 |
Q |
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| T |
45428483 |
tcacagtttggccttgatgatgatg |
45428507 |
T |
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