View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20967_low_10 (Length: 401)
Name: NF20967_low_10
Description: NF20967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20967_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 28629196 - 28629577
Alignment:
| Q |
1 |
ttactatttttgccaaagaggaagaaaatataggaacagcgttaggccaaatagagtgactggctctggattttggaaagcaactggaatagacaaacca |
100 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| || |
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| T |
28629196 |
ttactttttttgccaaagaggaagaaaatataggaacagcgttagaccaaatagagtgactggctctggattctggaaagcaactggaatagacaaagca |
28629295 |
T |
|
| Q |
101 |
atttactcaaatggagcagaaggaaatgattgtgttggactcnnnnnnncacttgtttactatcgcggtagtgccggaaaaggcaccaaaactgattgga |
200 |
Q |
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| T |
28629296 |
atatactcaaatggagcagaaggaaatgattgtgttggactcaaaaaaacacttgtttactatcgcggtagtgccggaaaaggcaccaaaactgattgga |
28629395 |
T |
|
| Q |
201 |
tgatgcatgagtttcgtcttccatcaaacattgatgccaaaacaaacatttcctatcctaggaatgatgttgattatgctcatgaagctgtaagtaactt |
300 |
Q |
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| T |
28629396 |
tgatgcatgagtttcgtcttccatcaaacattgatgccaaaacaaacatttcctatcctaggaatgatgctgattatgctcatgaagctgtaagtaactt |
28629495 |
T |
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| Q |
301 |
agataccaacaccaaacttttattgtttgtatatatgttgattttggagcagctttgcacataaaagtttgcttatcagagg |
382 |
Q |
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| T |
28629496 |
agataccaacaccaaacttttattgtttgtaaatatgttgattttggagcagctttgcacataaaagttttcttatcagagg |
28629577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 28614671 - 28614971
Alignment:
| Q |
1 |
ttactatttttgccaaagaggaagaaaatataggaacagcgttaggccaaatagagtgactggctctggattttggaaagcaactggaatagacaaacca |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
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| T |
28614671 |
ttactttttttgccaaagaggaagaaaatataggaacagcgttaggccaaatagagtgactggctctggattctggaaagcaactggaatagacaaagca |
28614770 |
T |
|
| Q |
101 |
atttactcaaatggagcagaaggaaatgattgtgttggactcnnnnnnncacttgtttactatcgcggtagtgccggaaaaggcaccaaaactgattgga |
200 |
Q |
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| T |
28614771 |
atttactcaaatggagcagaaggaaatgattgtgttggactcaaaaaaacacttgtttactatcgtggtagtgccggaaaaggcaccaaaactgattgga |
28614870 |
T |
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| Q |
201 |
tgatgcatgagtttcgtcttccatcaaacattgatgccaaaacaaacatttcctatcctaggaatgatgttgattatgctcatgaagctgtaagtaactt |
300 |
Q |
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| T |
28614871 |
tgatgcatgagtttcgtcttccatcaaacattgatgccaaaacaaacatttcctatcctaagaatgttgctgattatgctcatgaagctgtaagtaactt |
28614970 |
T |
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| Q |
301 |
a |
301 |
Q |
| |
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| |
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| T |
28614971 |
a |
28614971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 178 - 221
Target Start/End: Original strand, 33728000 - 33728043
Alignment:
| Q |
178 |
aaaaggcaccaaaactgattggatgatgcatgagtttcgtcttc |
221 |
Q |
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| T |
33728000 |
aaaaggcaccaaaactaattggattatgcatgagtatcgtcttc |
33728043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 33727878 - 33727930
Alignment:
| Q |
44 |
aggccaaatagagtgactggctctggattttggaaagcaactggaatagacaa |
96 |
Q |
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|||||||||||||| |||| ||||| | ||||||||||||||||| |||||| |
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| T |
33727878 |
aggccaaatagagtagctggatctgggtattggaaagcaactggaacagacaa |
33727930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 39633497 - 39633562
Alignment:
| Q |
16 |
aagaggaagaaaatataggaacagcgttaggccaaatagagtgactggctctggattttggaaagc |
81 |
Q |
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||||||||||||||||||||||||| | ||||| ||||||||||| || ||||||||||||||||| |
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| T |
39633497 |
aagaggaagaaaatataggaacagcataaggcctaatagagtgacaggatctggattttggaaagc |
39633562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 219
Target Start/End: Original strand, 39633648 - 39633697
Alignment:
| Q |
170 |
agtgccggaaaaggcaccaaaactgattggatgatgcatgagtttcgtct |
219 |
Q |
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| T |
39633648 |
agtgcagggaaaggcaccaaaactgattggatgatgcatgaatttcgtct |
39633697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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