View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20967_low_11 (Length: 392)
Name: NF20967_low_11
Description: NF20967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20967_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 12 - 377
Target Start/End: Complemental strand, 54216739 - 54216374
Alignment:
| Q |
12 |
atgaagcatgccaacctgaaaacaagttatggagacattcacaatcaataagaatttgagtgctacaaaataaaaccaatcgagagttagttaggttaaa |
111 |
Q |
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|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
54216739 |
atgaagcatgccaacctgaaaacaagttatagagatattcacaatcaataagaatttgagtgctacaaaataaaaccaattgagagttagttaggttaaa |
54216640 |
T |
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| Q |
112 |
atacaaaccgtggacatttacaagcaaaaataacaccactgatgcccaaagtattggactgccaaaatcacaaaaacacacattaaaagaaaccaaagtg |
211 |
Q |
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| T |
54216639 |
atacaaaccgtggacatttacaagcaaaaataacaccactgatgcccaaagtattggactgccaaaatcacaaaaacacacattaaaagaaaccaaagtg |
54216540 |
T |
|
| Q |
212 |
attaagaaattgaggagtaaaatattcttcaaatcaaagacatgattgcagccaagtgttggcaaatttgtcaagattacctgattcctacaactacctt |
311 |
Q |
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| T |
54216539 |
attaagaaattgaggagtaaaatattcttcaaatcaaagacatgattgcagccaagtgttggcaaatttgtcaagattacctgattcctacaactacctt |
54216440 |
T |
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| Q |
312 |
aaagtcatcttctaatgacctcttgatatatttttgaaaatcaaacttacttccaggtgctaaatg |
377 |
Q |
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| T |
54216439 |
aaagtcatcttctaatgacctcttgatatatttttgaaaatcaaacttacttccaggtgctaaatg |
54216374 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 365
Target Start/End: Complemental strand, 9928568 - 9928491
Alignment:
| Q |
288 |
ttacctgattcctacaactaccttaaagtcatcttctaatgacctcttgatatatttttgaaaatcaaacttacttcc |
365 |
Q |
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| T |
9928568 |
ttaccttactcccacaactactttgaagtcatcttctaatgatcttttgatatacttttggaaattaaatttacttcc |
9928491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 370
Target Start/End: Original strand, 30919875 - 30919957
Alignment:
| Q |
288 |
ttacctgattcctacaactaccttaaagtcatcttctaatgacctcttgatatatttttgaaaatcaaacttacttccaggtg |
370 |
Q |
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|||||||| ||| ||||| ||||| |||||||| || || || || ||||||||||||||||| | ||| |||||||| |||| |
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| T |
30919875 |
ttacctgactccaacaaccaccttgaagtcatcctccaaggatcttttgatatatttttgaaagttaaatttacttcccggtg |
30919957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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