View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20967_low_12 (Length: 386)
Name: NF20967_low_12
Description: NF20967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20967_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 31 - 376
Target Start/End: Complemental strand, 52112336 - 52111982
Alignment:
| Q |
31 |
gaggctaggtttcttcttaaacatgtgcatagtttactactaatacaaacacttcaataactttgctaatcaataatatggttggctttatgtaatgagt |
130 |
Q |
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| T |
52112336 |
gaggctaggtttcttcttcaacatgtgcatagtttaatactaatacaaacacttcaataactttgctaatcaataatatggttggctttatgtaatgagt |
52112237 |
T |
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| Q |
131 |
aaagcaaacgacgtagaaggaattgcaatctctaatgtaacagtacaacaggaaacagatatttgcagtgtgatctagtaggaatagcattcatttcttg |
230 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
52112236 |
aaagcaaacaacgtagaaggaattgcaatctctaatgtaacagtacaacaggaaacagatatttgcagtgtgatctagtatgaatagcattcatttcttg |
52112137 |
T |
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| Q |
231 |
gaaaggaaaaaggatcctctnnnnnnnnnnnnnnttctcttgtgttt-----taccatgttttaaatccatacccttaactaacttttctc------ctt |
319 |
Q |
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|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
52112136 |
gaaaggaaaaaggatcctct--aaaaaaaaaaaattctcttgtgttttacagtaccatgttttaaatccatacccttaactaacttttctcctttttctt |
52112039 |
T |
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| Q |
320 |
tttctttttcaatttccaaaaccctcccttctttatatttcaagggtcatggtctct |
376 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52112038 |
tttctttttcaatttccaaaaccctcccttctttatatttcaagggtcatggtctct |
52111982 |
T |
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