View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20967_low_13 (Length: 383)
Name: NF20967_low_13
Description: NF20967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20967_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 18 - 372
Target Start/End: Original strand, 29752507 - 29752861
Alignment:
| Q |
18 |
aaggatatccttgaagttattggccaatgttgccctcttttgaagtcactaaacctggagaggttgtctgtcgatggcatgcctgctgtgtactcttatt |
117 |
Q |
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| T |
29752507 |
aaggatatccttgaagttattggccaatgttgccctcttttgaagtcactaaacctggagaggttgtctgtcgatggcatgcctactgtgtactcttatt |
29752606 |
T |
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| Q |
118 |
acaagggtgatgaagcattttgtattgcaaaaacaatgagtgggttacgccatctaaaattgcttggattttggctttactatgatgaattgcttgctat |
217 |
Q |
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| T |
29752607 |
gcaagggtgatgaagcattttgtattgcaaaaacaatgagtgggttacgccatctaaaattgcttggattatggcttaactatgatgaattgcttgctat |
29752706 |
T |
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| Q |
218 |
tcttgacggttgcccgcttctcgaatctcttgatctgcgaggttgcatttattattattccaatccaagtttacttaaaaggtgcagtgagcaaattaaa |
317 |
Q |
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| T |
29752707 |
tcttgacggttgcccgcttctcgaatctcttgatctgcgattttgcatttattattcttccaaccaaagtttacttaaaaggtgcagtgagcaaattaaa |
29752806 |
T |
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| Q |
318 |
gattttcaccatccacttatctattagatggcaattaattgctaccatgatgatg |
372 |
Q |
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| T |
29752807 |
gattttcaccatccacttatctattagatggcaattaattgctaccatgatgatg |
29752861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 196 - 322
Target Start/End: Complemental strand, 29729925 - 29729793
Alignment:
| Q |
196 |
actatgatgaattgcttgctattcttgacggttgcccgcttctcgaatctcttgatctgcgaggttgcatttattattatt------ccaatccaagttt |
289 |
Q |
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| T |
29729925 |
actatgttggattgcttgctattcttgaccgctgccctcttcttgaatctcttgatctgcaaagttccaggtattattattccaaatccaatccaagttt |
29729826 |
T |
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| Q |
290 |
acttaaaaggtgcagtgagcaaattaaagattt |
322 |
Q |
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| T |
29729825 |
acttaaatggtgctgcgagcaaattaaagattt |
29729793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 29730251 - 29730183
Alignment:
| Q |
18 |
aaggatatccttgaagttattggccaatgttgccctcttttgaagtcactaaacctggagaggttgtct |
86 |
Q |
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| T |
29730251 |
aaggatttccttgaacttattggtcgatgttgccctcttttgaagtcactaaatcttgagaggttgtct |
29730183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 125 - 261
Target Start/End: Original strand, 29713313 - 29713449
Alignment:
| Q |
125 |
tgatgaagcattttgtattgcaaaaacaatgagtgggttacgccatctaaaattgcttggattttggctttactatgatgaattgcttgctattcttgac |
224 |
Q |
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|||| |||||||| |||||||||||||||| ||||||| ||||||| |||||| |||||||| | ||| || || |||| ||||||||||||| |
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| T |
29713313 |
tgataaagcatttgttattgcaaaaacaatgtctgggttatgccatcttaaattgaatggattttttagtaactgtggtggattggttgctattcttgat |
29713412 |
T |
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| Q |
225 |
ggttgcccgcttctcgaatctcttgatctgcgaggtt |
261 |
Q |
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| T |
29713413 |
ggctgccctcttcttgaatctcttaatctacgaggtt |
29713449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 255
Target Start/End: Complemental strand, 29730142 - 29730029
Alignment:
| Q |
142 |
ttgcaaaaacaatgagtgggttacgccatctaaaattgcttggattttggctttactatgatgaattgcttgctattcttgacggttgcccgcttctcga |
241 |
Q |
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|||| |||||||||| ||||||||||||||| ||| || |||| ||| || |||||| || ||| ||||||||||||||||| |||| | ||| || |
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| T |
29730142 |
ttgcgaaaacaatgactgggttacgccatcttaaactgaatggaatttatgttaactatgttggatttcttgctattcttgacggctgccatcatcttga |
29730043 |
T |
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| Q |
242 |
atctcttgatctgc |
255 |
Q |
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|||| ||||||||| |
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| T |
29730042 |
atcttttgatctgc |
29730029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 29713205 - 29713249
Alignment:
| Q |
26 |
ccttgaagttattggccaatgttgccctcttttgaagtcactaaa |
70 |
Q |
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||||||||||||||| | | ||||||||||||||||||||||||| |
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| T |
29713205 |
ccttgaagttattggtcgaagttgccctcttttgaagtcactaaa |
29713249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 257
Target Start/End: Original strand, 29699689 - 29699739
Alignment:
| Q |
207 |
ttgcttgctattcttgacggttgcccgcttctcgaatctcttgatctgcga |
257 |
Q |
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| T |
29699689 |
ttgcttgccattcttaatggttgccctcttcttgaatctcttgatctgcga |
29699739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 104 - 262
Target Start/End: Complemental strand, 41100314 - 41100156
Alignment:
| Q |
104 |
tgtgtactcttattacaagggtgatgaagcattttgtattgcaaaaacaatgagtgggttacgccatctaaaattgcttggattttggctttactatgat |
203 |
Q |
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||||||||||||| || ||| |||| |||||||| ||||||||||| |||| ||||||||||||||| ||||| |||||||| || | | |||| | |
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| T |
41100314 |
tgtgtactcttatgacgaggatgataaagcatttgttattgcaaaaataatgtctgggttacgccatcttgaattgaatggatttttgcgtaattatggt |
41100215 |
T |
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| Q |
204 |
gaattgcttgctattcttgacggttgcccgcttctcgaatctcttgatctgcgaggttg |
262 |
Q |
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|||||||||| ||||||| || ||||| ||||| ||||||||| |||| |||||||| |
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| T |
41100214 |
agattgcttgctcttcttgatggctgccctcttcttgaatctcttaatctacgaggttg |
41100156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 67
Target Start/End: Complemental strand, 42563704 - 42563664
Alignment:
| Q |
27 |
cttgaagttattggccaatgttgccctcttttgaagtcact |
67 |
Q |
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| T |
42563704 |
cttgaagccattggacaatgttgccctcttttgaagtcact |
42563664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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