View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20967_low_15 (Length: 343)
Name: NF20967_low_15
Description: NF20967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20967_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 9 - 329
Target Start/End: Complemental strand, 29817508 - 29817188
Alignment:
| Q |
9 |
agatgaatgggtaggatttgcattgtgtttccagctagtgagttataccttcccacctgaactgtgcaatcatgagattgattgttatttgttttcacct |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29817508 |
agatgaatgggtaggatttgcattgtgtttccagctagtgagttataccttcccacctgaactgtgcaatcatgagattgattgttatttgttttcacct |
29817409 |
T |
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| Q |
109 |
aatggtaagcagctgatcttgatcagcaccaggagattacctcctatggatccatgttatcctcacctttatattctctacttgtccattgaacaattcc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29817408 |
aatggtaagcagctgatcttgatcagcaccaggagattacctcctatggatccatgttatcctcacctttatattctctacttgtccattgaacaattcc |
29817309 |
T |
|
| Q |
209 |
gcgacaagattctccaagatgattattgggatggcgttgaattttcattgaaatgttattgttgccattcattgcgaatattcagtagtggctgccgttt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29817308 |
gcgacaagattctccaagatgattattgggatggcgttgaattttcattgaaatgttattgttgccattcattgcgaatattcagtagtggctgccgttt |
29817209 |
T |
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| Q |
309 |
ggtgtgcaaacaagttgttga |
329 |
Q |
| |
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||||||||||||||||||||| |
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| T |
29817208 |
ggtgtgcaaacaagttgttga |
29817188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 9 - 327
Target Start/End: Complemental strand, 29825766 - 29825454
Alignment:
| Q |
9 |
agatgaatgggtaggatttgcattgtgtttccagctagtgagttataccttcccacctgaactgtgcaatcatgagattgattgttatttgttttcacct |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
29825766 |
agatgaatgggtaggatttgcattgtgtttcctattagtgagttatgccgtcccacctgaattgtgcaatcatgagattgattgttatttgttttcgcct |
29825667 |
T |
|
| Q |
109 |
aatggtaagcagctgatcttgatcagcaccaggagattacctcctatggatccatgttatcctcacctttatattctctacttgtccattgaacaattcc |
208 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
29825666 |
aatggtaagcaa------ttgatcagcaccaggagattacctcctatggatccctgttatcctcatctttatattctctacttgtccattgaacaattcc |
29825573 |
T |
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| Q |
209 |
gcgacaagattctccaagatgattattgggatggcgttgaattttcattgaaatgttattgttgccattcattgcgaatattcagtagtggctgccgttt |
308 |
Q |
| |
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||||||| |||||| |||||||||||||||| | |||||||||||||||||||||||||||||| || ||||||| |||| | | ||| ||||||||||| |
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| T |
29825572 |
gcgacaaaattctcgaagatgattattgggacgacgttgaattttcattgaaatgttattgttgtcaatcattgcaaatagtgaatagcggctgccgttt |
29825473 |
T |
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| Q |
309 |
ggtgtgcaaacaagttgtt |
327 |
Q |
| |
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|||||||||||||| |||| |
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| T |
29825472 |
ggtgtgcaaacaagatgtt |
29825454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 9 - 233
Target Start/End: Original strand, 29575106 - 29575324
Alignment:
| Q |
9 |
agatgaatgggtaggatttgcattgtgtttccagctagtgagttataccttcccacctgaactgtgcaatcatgagattgattgttatttgttttcacct |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| | |||||||||| |||| || |||||||||||||||||||||||| || || |
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| T |
29575106 |
agatgaatgggtaggatttgcattgtgtttcctattagtgagttatgctgacccacctgaattgtgtaagcatgagattgattgttatttgtttgcatct |
29575205 |
T |
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| Q |
109 |
aatggtaagcagctgatcttgatcagcaccaggagattacctcctatggatccatgttatcctcacctttatattctctacttgtccattgaacaattcc |
208 |
Q |
| |
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||||||||| || || |||| ||||||||| |||||||||||||| |||||||||||||| ||||||||||||||| ||||||| || |||| | |
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| T |
29575206 |
aatggtaagaag------ttaatcaccaccaggagtttacctcctatggacccatgttatcctcatctttatattctctacatgtccatcgatgaatttc |
29575299 |
T |
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| Q |
209 |
gcgacaagattctccaagatgatta |
233 |
Q |
| |
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|||| | |||||| |||||||||| |
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| T |
29575300 |
gcgatgaaattctcaaagatgatta |
29575324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 60 - 327
Target Start/End: Complemental strand, 29595244 - 29594977
Alignment:
| Q |
60 |
cccacctgaactgtgcaatcatgagattgattgttatttgttttcacctaatggtaagcagctgatcttgatcagcaccaggagattacctcctatggat |
159 |
Q |
| |
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||||||||| |||||||| |||||||||||||||| ||||||||| ||||| ||||| | || ||| |||||| | ||||||||||||| || |
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| T |
29595244 |
cccacctgagctgtgcaaccatgagattgattgttgcttgttttcaagtaatgctaagctg------tttgtcaccaccagaacattacctcctatgaat |
29595151 |
T |
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| Q |
160 |
ccatgttatcctcacctttatattctctacttgtccattgaacaattccgcgacaagattctccaagatgattattg------ggatggcgttgaatttt |
253 |
Q |
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|||| | ||||||||||||||||||||||||||||||||| ||||| ||||| | |||||| |||||||||| || | ||||| |||||||| |
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| T |
29595150 |
ccatatcttcctcacctttatattctctacttgtccattgatcaatttcgcgatagaattctcaaagatgattactggagtgagaatggcattgaatttg |
29595051 |
T |
|
| Q |
254 |
cattgaaatgttattgttgccattcattgcgaatattcagtagtggctgccgtttggtgtgcaaacaagttgtt |
327 |
Q |
| |
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|||||||||||| || || |||||||||| |||| | | |||| |||||||||||||| || |||| |||| |
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| T |
29595050 |
tattgaaatgttactgctgtcattcattgcaaatagtgaagtgtggttgccgtttggtgtgtaagcaagatgtt |
29594977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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