View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20967_low_16 (Length: 337)
Name: NF20967_low_16
Description: NF20967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20967_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 16 - 320
Target Start/End: Original strand, 26018986 - 26019290
Alignment:
| Q |
16 |
aaaggtgatgatgttgctgatgtgttactcttgaagtttcttagagctagagactttagagtcaatgatgcttacactatgcttgtgaagtgtctttctt |
115 |
Q |
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| T |
26018986 |
aaaggtgatgatgttgctgatgtgttactcttgaagtttcttagagctagagactttagagtcaatgatgcttacactatgcttgtgaagtgtctttctt |
26019085 |
T |
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| Q |
116 |
ggagaaaagaatttggtgctgaaaatgttgtggatgaagatttgggattcaaagagcttgaaggtgttgttgctttcactcatgggtttgatagaaaggg |
215 |
Q |
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| T |
26019086 |
ggagaaaagaatttggtgctgaaaatgttgtggatgaagatttgggattcaaagagcttgaaggtgttgttgctttcactcatgggtttgatagagaggg |
26019185 |
T |
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| Q |
216 |
acatcctgtgtgttataatcattatggtgtgttcaaagataaggaaatgtatgagagggtttttggtgatgaagagaagttgaagaagtttttgaggtgg |
315 |
Q |
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| T |
26019186 |
acatcctgtgtgttataatcattatggtgtgttcaaagataaggaaatgtatgagagggtttttggtgatgaagagaagttgaagaagtttttgaggtgg |
26019285 |
T |
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| Q |
316 |
agggt |
320 |
Q |
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| T |
26019286 |
agggt |
26019290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 212 - 320
Target Start/End: Complemental strand, 3712919 - 3712811
Alignment:
| Q |
212 |
agggacatcctgtgtgttataatcattatggtgtgttcaaagataaggaaatgtatgagagggtttttggtgatgaagagaagttgaagaagtttttgag |
311 |
Q |
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| T |
3712919 |
agggtcatcctgtttgttacaatgcttatggtttgtttagagataaagatatgtatgagaggatttttggtgatgaagagaagcttaagaagtttcttag |
3712820 |
T |
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| Q |
312 |
gtggagggt |
320 |
Q |
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| T |
3712819 |
gtggagggt |
3712811 |
T |
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