View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20967_low_17 (Length: 316)
Name: NF20967_low_17
Description: NF20967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20967_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 17 - 303
Target Start/End: Complemental strand, 47391169 - 47390882
Alignment:
| Q |
17 |
agatttctgatttgaaagagaagatattagaggattgagaagtgtcagctcagaataagcagcgccaaaaagaatctgaggttctctcttcaccccttat |
116 |
Q |
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| T |
47391169 |
agatttctgatttgaaagggaagatattagaggattgagaagtgtcagctcagaataagcagcgccaaaaagaatctgaggttctctcttcaccccttat |
47391070 |
T |
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| Q |
117 |
tttatttatatatatatct-ttttgacaatgccacacacaaaccaccaaaaaggaaaagaaaatatggttttgcctctgtttgcatagaatgagtttatt |
215 |
Q |
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| T |
47391069 |
tttatttatatatatatatcttttgacaatgccacacacaaaccaccaaaaaggaaaagaaaatatggttttgcctctgtttgcatagaatgagtttatt |
47390970 |
T |
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| Q |
216 |
gatcggaattgcatgtttcatgtcagaataaaagtaacatgtttcaaccataatctgtgtgactcatttttcacattgaattccattt |
303 |
Q |
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| T |
47390969 |
gatcggaattgcatgtttcatgtcagaataaaagtaacatgtttcaaccataatctgtgtgactcatttttcacattgaattccattt |
47390882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 17 - 303
Target Start/End: Original strand, 40624960 - 40625240
Alignment:
| Q |
17 |
agatttctgatttgaaagagaagatattagaggattgagaagtgtcagctcagaataagcagcgccaaaaagaatctgaggttctctcttcaccccttat |
116 |
Q |
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| T |
40624960 |
agatttctgatttgaaagagaagatattagaggatcgagaagtgtcagctcagaataagcagcgccaaaaagaagctgaggttctctcttcaccccttat |
40625059 |
T |
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| Q |
117 |
tttatttatatatatatctttttgacaatgccacacacaaaccaccaaaaaggaaaagaaaatatggttttgcctctgtttgcatagaatgagtttattg |
216 |
Q |
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| T |
40625060 |
tttatttatatatat---ctattgacaatgc--cacacttaccaccacaaaggaaaagaaaatatggttttgcctctgtttgtatagaa-gagtttattg |
40625153 |
T |
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| Q |
217 |
atcggaattgcatgtttcatgtcagaataaaagtaacatgtttcaaccataatctgtgtgactcatttttcacattgaattccattt |
303 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||| |
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| T |
40625154 |
atcggaattgcacgtttcatgtcagaataaaagtaacatgtttcaaccgtaatgtgtgtgactcattttgcacattgaattccattt |
40625240 |
T |
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