View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20967_low_19 (Length: 270)
Name: NF20967_low_19
Description: NF20967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20967_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 2 - 181
Target Start/End: Original strand, 41984709 - 41984888
Alignment:
| Q |
2 |
acatataatcacatatttcctataatttgcaataaaacataaataacgtatatatttttgctgtgtttttgtatttcactatcgattggacaatcataat |
101 |
Q |
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| T |
41984709 |
acatataatcacatatttcctataatttgcaataaaacataaataacgtatatatttttgctgtgtttttgtatttcactatcgattggacaatcataat |
41984808 |
T |
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| Q |
102 |
caacacggcatttcaataaaccaaaggttcaaaccaattatgtgcggtatattctcatggaaccatgtctttattagata |
181 |
Q |
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| T |
41984809 |
caacacggcatttcaataaaccaaaggttcaaaccaattatgtgtggtatattatcatggaaccatgtctttattagata |
41984888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 194 - 256
Target Start/End: Original strand, 41984958 - 41985020
Alignment:
| Q |
194 |
ctgcatatgttgtgtcaattgcaagttgtaactgtactttcctcactcatatggcacaggttc |
256 |
Q |
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| T |
41984958 |
ctgcatatgttgtgtcaattgcaagttgtaactgtactttcctcactcatatgccacaggttc |
41985020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 41986937 - 41986995
Alignment:
| Q |
1 |
tacatataatcacatatttcctataatttgcaataaaacataaataacgtatatatttt |
59 |
Q |
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| T |
41986937 |
tacatataatcacacatttcctataatttccaatagaacaataataacatatatgtttt |
41986995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 248
Target Start/End: Original strand, 41987517 - 41987571
Alignment:
| Q |
194 |
ctgcatatgttgtgtcaattgcaagttgtaactgtactttcctcactcatatggc |
248 |
Q |
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| T |
41987517 |
ctgcataagctgtgtcaattgcaagttgcaactgcactttcctcagtcctatggc |
41987571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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