View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20967_low_20 (Length: 267)
Name: NF20967_low_20
Description: NF20967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20967_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 50752142 - 50752398
Alignment:
| Q |
1 |
ctgacaagtaaacaccaacattattttttacgacatcgccaaaccaagatcttataggggagcctaagcagctccatcaacattaaggatggcgttagag |
100 |
Q |
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| T |
50752142 |
ctgacaagtaaacaccaacattattttttacgacatcgccaaaccaagatcttataggggagcctaagcagctccatcaacattaaggatggcgttagag |
50752241 |
T |
|
| Q |
101 |
tgattgtgttgttattccactttatgagtctatcttccaacgcaacattagagatttgattaaaccaaactttaaaagttttaaccatattttgaatgtt |
200 |
Q |
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| T |
50752242 |
tgattgtgttgttattccactttatgagtctatcttccaacgcaacattagagatttgattaaaccaaactttaaaagttttaaccatattttgaatgtt |
50752341 |
T |
|
| Q |
201 |
gaaagatagattacttatggaccaaatttctttacataagcacatgttgtttctctg |
257 |
Q |
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| T |
50752342 |
gaaagatagattacttatggaccaaatttctttacataagcacatgttgtttctctg |
50752398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 73 - 229
Target Start/End: Complemental strand, 11870509 - 11870355
Alignment:
| Q |
73 |
tccatcaacattaaggatggcgttagagtgattgtgttgttattccactttatgagtctatcttccaacgcaacattagagatttgattaaaccaaactt |
172 |
Q |
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| T |
11870509 |
tccatcaacattaaggatgatgctagagtgattgt--tgttattccactttataattctatcttgtgatgcaacattagagattggattaaagcaagctt |
11870412 |
T |
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| Q |
173 |
taaaagttttaaccatattttgaatgttgaaagatagattacttatggaccaaattt |
229 |
Q |
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| T |
11870411 |
tacaagtttcaaccatattctaaatgtaaaaagatagataacttatagaccatattt |
11870355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 73 - 245
Target Start/End: Original strand, 43798229 - 43798399
Alignment:
| Q |
73 |
tccatcaacattaaggatggcgttagagtgattgtgttgttattccactttatgagtctatcttccaacgcaacattagagatttgattaaaccaaactt |
172 |
Q |
| |
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|||||||||||||| |||| || |||||||||||| ||| |||| ||||||||||| |||||||| | ||||||||| | ||| ||||||| |||| || |
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| T |
43798229 |
tccatcaacattaaagatgacgctagagtgattgt--tgtgattctactttatgagtgtatcttccgatgcaacattaaaaattggattaaagcaaattt |
43798326 |
T |
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| Q |
173 |
taaaagttttaaccatattttgaatgttgaaagatagattacttatggaccaaatttctttacataagcacat |
245 |
Q |
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||||||||| ||||||||| |||||||| ||| ||||| | | |||||||||||||| || | ||||||||| |
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| T |
43798327 |
taaaagtttcaaccatattctgaatgttaaaaaatagacgattaatggaccaaatttcgttgcttaagcacat |
43798399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 225
Target Start/End: Complemental strand, 8655081 - 8654930
Alignment:
| Q |
73 |
tccatcaacattaaggatggcgttagagtgattgtgttgttattccactttatgagtctatcttccaacgcaacattagagatttgattaaaccaaactt |
172 |
Q |
| |
|
||||||||||||||||||| || | ||||| | ||||||||||||| ||||||||| |||||| | ||| || |||||||| ||||||| | | ||| |
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| T |
8655081 |
tccatcaacattaaggatgacgcaatagtgaat-tgttgttattccattttatgagtttatcttttgaagcagcaatagagattggattaaagcgagctt |
8654983 |
T |
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| Q |
173 |
taaaagttttaaccatattttgaatgttgaaagatagattacttatggaccaa |
225 |
Q |
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|||| ||| ||||||||| |||||||||||||||| || ||| ||||||||| |
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| T |
8654982 |
taaatgttacaaccatattatgaatgttgaaagatatatgactcatggaccaa |
8654930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 253
Target Start/End: Original strand, 564678 - 564755
Alignment:
| Q |
176 |
aagttttaaccatattttgaatgttgaaagatagattacttatggaccaaatttctttacataagcacatgttgtttc |
253 |
Q |
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|||||| ||||||||| || |||||||| || || ||| ||||||||||||||| |||| ||||||||||||||| |
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| T |
564678 |
aagtttcaaccatattctggatgttgaatgagagcttatttatggaccaaattttgttactggagcacatgttgtttc |
564755 |
T |
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