View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20967_low_22 (Length: 255)

Name: NF20967_low_22
Description: NF20967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20967_low_22
NF20967_low_22
[»] chr2 (1 HSPs)
chr2 (13-239)||(37040985-37041222)
[»] chr1 (2 HSPs)
chr1 (51-116)||(13138768-13138833)
chr1 (51-116)||(24557468-24557533)
[»] chr8 (1 HSPs)
chr8 (69-116)||(13141786-13141833)
[»] chr7 (2 HSPs)
chr7 (38-115)||(34239495-34239571)
chr7 (45-112)||(14244125-14244193)
[»] chr3 (1 HSPs)
chr3 (80-117)||(12488509-12488546)


Alignment Details
Target: chr2 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 13 - 239
Target Start/End: Original strand, 37040985 - 37041222
Alignment:
Q  13 aatatattataacaaaaagcaaagaacaaaacaaaggagggggccagaccaaaccaccttaatgagcaacaaacctaaagttaggcatccctaacttgtt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  37040985 aatatattataacaaaaagcaaagaacaaaacaaaggagggggctagaccaaacctccttaatgagcaacaaacctaaagttaggcatccctaacttgtt 37041084  T
Q  113 ttgaacnnnnnnngaagttaggctgctgggaatttgcatcaaaattgatggaagattacaagataaacttaaattagtc-----------acattggttt 201  Q
    ||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |           ||||||||||    
T  37041085 ttgaacaaaaaaagaagttaggctgctgggaatttgcatcaaaattgatggaagattacaagataaacttaaattaaccaagtgatctgtacattggttt 37041184  T
Q  202 ccctccctaaatatgtgtgagataataaaattcatatg 239  Q
    ||||||||||||||||||||||||||||||||||||||    
T  37041185 ccctccctaaatatgtgtgagataataaaattcatatg 37041222  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 51 - 116
Target Start/End: Original strand, 13138768 - 13138833
Alignment:
Q  51 gggggccagaccaaaccaccttaatgagcaacaaacctaaagttaggcatccctaacttgttttga 116  Q
    |||||||| |||||||| |||||||| | |||||||||||||||||||||||||||||||||||||    
T  13138768 gggggccaaaccaaacctccttaatgggtaacaaacctaaagttaggcatccctaacttgttttga 13138833  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 51 - 116
Target Start/End: Original strand, 24557468 - 24557533
Alignment:
Q  51 gggggccagaccaaaccaccttaatgagcaacaaacctaaagttaggcatccctaacttgttttga 116  Q
    |||||||| |||||||| |||||||| | |||||||||||||||||||||||||||||||||||||    
T  24557468 gggggccaaaccaaacctccttaatgggtaacaaacctaaagttaggcatccctaacttgttttga 24557533  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 69 - 116
Target Start/End: Original strand, 13141786 - 13141833
Alignment:
Q  69 ccttaatgagcaacaaacctaaagttaggcatccctaacttgttttga 116  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||    
T  13141786 ccttaatgagtaacaaacctaaagttaggcatccctaacttgttttga 13141833  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 38 - 115
Target Start/End: Original strand, 34239495 - 34239571
Alignment:
Q  38 acaaaacaaaggagggggccagaccaaaccaccttaatgagcaacaaacctaaagttaggcatccctaacttgttttg 115  Q
    |||||| |||||||||| | | |||||||| |||||||||| ||||||||||||||||| ||| ||||||||||||||    
T  34239495 acaaaataaaggaggggtcaa-accaaacctccttaatgagtaacaaacctaaagttagacatacctaacttgttttg 34239571  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 112
Target Start/End: Original strand, 14244125 - 14244193
Alignment:
Q  45 aaaggaggg-ggccagaccaaaccaccttaatgagcaacaaacctaaagttaggcatccctaacttgtt 112  Q
    ||||||||| ||||| |||||||| |||||||||| |||||||||||||||| ||||| ||||||||||    
T  14244125 aaaggagggtggccaaaccaaacctccttaatgagtaacaaacctaaagttaagcatctctaacttgtt 14244193  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 117
Target Start/End: Complemental strand, 12488546 - 12488509
Alignment:
Q  80 aacaaacctaaagttaggcatccctaacttgttttgaa 117  Q
    |||||||||| |||||||||| ||||||||||||||||    
T  12488546 aacaaacctatagttaggcattcctaacttgttttgaa 12488509  T

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