View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20967_low_28 (Length: 237)
Name: NF20967_low_28
Description: NF20967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20967_low_28 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 220481 - 220262
Alignment:
| Q |
18 |
taaagtgtctccaaaaatgttcgaaaagcttggagaatcttgcatcaagcattatatataaatattattcttgaaatacttttgacattagaacaatgta |
117 |
Q |
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| T |
220481 |
taaagtgtctccaaaaatgttcgaaaagcttggagaatcttgcatcaagcattatatataaatattattcttgaaatacttttgacattagaacaatgta |
220382 |
T |
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| Q |
118 |
tttgtgaggtttctaattcaaaactcgaactagctataataagaaaaaagttttctgtggttgttggggtttgagtcccgtactttacatatattattat |
217 |
Q |
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| T |
220381 |
tttgtgaggtttctaattcaaaactcgaactagctataataagaaaaaagttttctgtggttgttggggtttgagtcccggactttacatatattattat |
220282 |
T |
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| Q |
218 |
gcattgtttctaccaactat |
237 |
Q |
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|||||||||||| ||||||| |
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| T |
220281 |
gcattgtttctatcaactat |
220262 |
T |
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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 236
Target Start/End: Complemental strand, 3422037 - 3421994
Alignment:
| Q |
193 |
tcccgtactttacatatattattatgcattgtttctaccaacta |
236 |
Q |
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| T |
3422037 |
tcccgaactttgcatatattattatgcattgtttctaccaacta |
3421994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 235
Target Start/End: Complemental strand, 18458801 - 18458765
Alignment:
| Q |
199 |
actttacatatattattatgcattgtttctaccaact |
235 |
Q |
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| T |
18458801 |
actttgcatatattattatgcattgtttctaccaact |
18458765 |
T |
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