View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20967_low_3 (Length: 624)
Name: NF20967_low_3
Description: NF20967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20967_low_3 |
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| [»] scaffold0054 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 543; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 4 - 605
Target Start/End: Complemental strand, 42978730 - 42978128
Alignment:
| Q |
4 |
ttgaggaggagcagagagctataaatgcagcacatgttgaagctgaaagtgttgaaaatggaataggtgttgtcaagttgatgggccggtacagtggtaa |
103 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
42978730 |
ttgaggaggctcagagagctataaatgcagcacatgttgaagctgaaagtgttgaaaacggaataggtgttgtcaagttgatgggccggtacagtggtaa |
42978631 |
T |
|
| Q |
104 |
gtttcctgattgcttgtaatgcctcaacttatcagcttcgtgtgcttcaatcccctagtaaattaaaaggaacacctcatttaaagaaagaaaatagaat |
203 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
42978630 |
gtttcctgattgcttgtaatgcctccacttatcagcttcgtgtgcttcaatcccctagtaaattaaaaggaacgcctcatttaaagaaagaaaatagaat |
42978531 |
T |
|
| Q |
204 |
atggtttcacaaaattaacagagcctaagttttgggtgcatggtgcaggatttattgcaatgtatgccacccttgcgaatcgggatgtggactgttgctt |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42978530 |
atggtttcacaaaattaacagagcctaagttttgggtgcatggtgcaggatttattgcaatgtatgccacccttgcgaatcgggatgtggactgttgctt |
42978431 |
T |
|
| Q |
304 |
aattccggagacaccctttttccttgaaggtccaggcggtcttttcgaatatacggagagaaggctaaaagaaaatggccacatggttattgtgattgct |
403 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42978430 |
gattccggagacaccctttttccttgaaggtccaggcggtcttttcgaatatacggagagaaggctaaaagaaaatggccacatggttattgtgattgct |
42978331 |
T |
|
| Q |
404 |
gaaggagcaggacaggaacttgttactgagagcatccaatccatgcacaagcagcaggatgcttctggaaacaaacttcttcaagatgttgggctatgga |
503 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42978330 |
gaaggagcaggacaggaacttgttactgagagcatccaatccatgcacaagcagcaggatgcttctggaaacaaacttcttcaagatgttgggctatgga |
42978231 |
T |
|
| Q |
504 |
tatcccataagttgaaggtgttga-nnnnnnnnattctgtttgtgctggttacctcaatgtgatctttaaaatgtattattatcatacttcatttcttta |
602 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42978230 |
tatcccataagttgaaggtgttgatttttttttattctgtttgtgctgtttacctcaatgtgatctttaaaatgtattattatcatacttcatttcttta |
42978131 |
T |
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| Q |
603 |
ata |
605 |
Q |
| |
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||| |
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| T |
42978130 |
ata |
42978128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 106; Significance: 1e-52; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 248 - 507
Target Start/End: Original strand, 34227452 - 34227708
Alignment:
| Q |
248 |
gcaggatttattgcaatgtatgccacccttgcgaatcgggatgtggactgttgcttaattccggagacaccctttttccttgaaggtccaggcggtcttt |
347 |
Q |
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||||||||||||||||||||||| || ||||| | | | ||||| ||||||||||| ||||||||| | || |||| ||| |||||||| || || |||| |
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| T |
34227452 |
gcaggatttattgcaatgtatgctactcttgcaagtagagatgttgactgttgcttgattccggagtcgccgttttacctcgaaggtcctggtggacttt |
34227551 |
T |
|
| Q |
348 |
tcgaatatacggagagaaggctaaaagaaaatggccacatggttattgtgattgctgaaggagcaggacaggaacttgttactgagagcatccaatccat |
447 |
Q |
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||||||| || |||||||| || |||||||| ||||||||||| ||||||||||||||||| |||||||||||| |||| ||||| | |||||| |
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| T |
34227552 |
atgaatatatagatagaaggctcaaggaaaatggtcacatggttatcgtgattgctgaaggagcgggacaggaacttcttaccgagagtctgcaatcc-- |
34227649 |
T |
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| Q |
448 |
gcacaagcagcaggatgcttctggaaacaaacttcttcaagatgttgggctatggatatc |
507 |
Q |
| |
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|||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34227650 |
-ggcaagaaacaggatgcttctggaaacaaacttcttcaagatgttgggctatggatatc |
34227708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 21 - 108
Target Start/End: Original strand, 34227073 - 34227160
Alignment:
| Q |
21 |
gctataaatgcagcacatgttgaagctgaaagtgttgaaaatggaataggtgttgtcaagttgatgggccggtacagtggtaagtttc |
108 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||| ||||||| || ||||| |||||||||| |
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| T |
34227073 |
gctataaatgcagcacatgttgaagctgaaagttttgaaaatggtatcggtgttgtcaagctgatgggtcgatacagcggtaagtttc |
34227160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 247 - 514
Target Start/End: Original strand, 51585222 - 51585486
Alignment:
| Q |
247 |
tgcaggatttattgcaatgtatgccacccttgcgaatcgggatgtggactgttgcttaattccggagacaccctttttccttgaaggtccaggcggtctt |
346 |
Q |
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|||||| |||||||| ||| |||| || ||||| | | | ||||||||||||||||| ||||| ||| ||||||| | ||||||||| || || ||| |
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| T |
51585222 |
tgcaggttttattgcgatgcatgctacacttgctagtagagatgtggactgttgcttgattccagagtcacccttctaccttgaagggaagggtggactt |
51585321 |
T |
|
| Q |
347 |
ttcgaatatacggagagaaggctaaaagaaaatggccacatggttattgtgattgctgaaggagcaggacaggaacttgttactgagagcatccaatcca |
446 |
Q |
| |
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| |||| || || |||||| ||||||| ||| || ||||| || || || ||||| ||||||||||| || || |||| || ||||| ||| || |
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| T |
51585322 |
tatgaatttattacgaaaaggctgaaagaaagtggacatatggtcatagtcatagctgagggagcaggacaagatctgcttacagaaagcatgcaagaca |
51585421 |
T |
|
| Q |
447 |
tgcacaagcagcaggatgcttctggaaacaaacttcttcaagatgttgggctatggatatcccataag |
514 |
Q |
| |
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|| || ||| ||||||||||||||||||| || |||||||||||||| |||||||||| |||||| |
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| T |
51585422 |
tggac---cagaaggatgcttctggaaacaagctacttcaagatgttggtttatggatatctcataag |
51585486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 30 - 102
Target Start/End: Original strand, 51584990 - 51585062
Alignment:
| Q |
30 |
gcagcacatgttgaagctgaaagtgttgaaaatggaataggtgttgtcaagttgatgggccggtacagtggta |
102 |
Q |
| |
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|||||||||||||| |||||||||||||| ||||| || |||||||| ||| | ||||| || || ||||||| |
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| T |
51584990 |
gcagcacatgttgaggctgaaagtgttgagaatggcattggtgttgtaaagctaatgggtcgttatagtggta |
51585062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 246 - 323
Target Start/End: Complemental strand, 43297428 - 43297351
Alignment:
| Q |
246 |
gtgcaggatttattgcaatgtatgccacccttgcgaatcgggatgtggactgttgcttaattccggagacaccctttt |
323 |
Q |
| |
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||||||||||||| || |||||||| || ||||||| || |||||||||||||| || ||||| ||| ||||||||| |
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| T |
43297428 |
gtgcaggatttatagccatgtatgcaactcttgcgagccgagatgtggactgttgtttgattcctgagtcaccctttt |
43297351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 510
Target Start/End: Complemental strand, 41995 - 41958
Alignment:
| Q |
473 |
aacaaacttcttcaagatgttgggctatggatatccca |
510 |
Q |
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||||| ||||||||||||||| |||||||||||||||| |
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| T |
41995 |
aacaagcttcttcaagatgttaggctatggatatccca |
41958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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