View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20967_low_4 (Length: 604)
Name: NF20967_low_4
Description: NF20967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20967_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 20 - 594
Target Start/End: Original strand, 2490228 - 2490800
Alignment:
| Q |
20 |
taatagtgtgtactgttagcattcatacnnnnnnnnnngtggtggggcgaggggcacataaaaaatcaaaatctgcaatatattgttttgatggcatatt |
119 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
2490228 |
taatagtgtgtactgttagcattcatacttttttttttgtggtggggcgaggggcacataaaaaatcaa--tttgcaatatattgttttgatggcatatt |
2490325 |
T |
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| Q |
120 |
tgtgtgtacacaacaacaatcagaataccctgaaattcaatagtattttaagcacgtttaatcactatatcgttcatctttgattaccaggattatggtt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2490326 |
tgtgtgtacacaacaacaatcagaataccctgaaattccatagtattttaagcacgtttaatcactatatcgttcatctttgattaccaggattatggtt |
2490425 |
T |
|
| Q |
220 |
gggctaccgtctgcagagaacagagaaaatatattgaggacccttttggctaaagagaaggtgcacgggggacttgattttaaggaactcgcaactatga |
319 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2490426 |
gggctaccgtccgcagagaacagagaaaatatattgaggacccttttggctaaagagaaggtgcacgggggacttgattttaaggaactcgcaactatga |
2490525 |
T |
|
| Q |
320 |
ctgaaggatatagtggaagtgatctgaaggtttttctctattattgttttcctatggccgtaacttaactatcgtgttacaatctacaaatgcttttctt |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2490526 |
ctgaaggatatagtggaagtgatctgaaggtttttctctattattgttttcctatggccgtaacttaactatcgtgttacaatctacaaatgcttttctt |
2490625 |
T |
|
| Q |
420 |
atgtttagtttctgatgtcttaatgcattttccattttcattaattgttaaatgcagaacttatgcacaaccgctgcttatagacctgttagagagctaa |
519 |
Q |
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| T |
2490626 |
atgtttagtttctgatgtcttaatgcattttccattttcattaattgttaaatgcagaacttatgcacaaccgctgcttatagacctgttagagagctaa |
2490725 |
T |
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| Q |
520 |
ttcagcaagagatacaaaaggattcggtaacttggcaatttctctaaagatttactataatcctattatcctatg |
594 |
Q |
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| T |
2490726 |
ttcagcaagagatacaaaaggattcggtaacttggcaatttctctaaagatttactataatcctattatcctatg |
2490800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 470 - 531
Target Start/End: Complemental strand, 41589494 - 41589433
Alignment:
| Q |
470 |
aatgcagaacttatgcacaaccgctgcttatagacctgttagagagctaattcagcaagaga |
531 |
Q |
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| T |
41589494 |
aatgcagaacttgtgcacaactgctgcttatcggccagttagagagttgattcagcaagaga |
41589433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 352
Target Start/End: Complemental strand, 41589925 - 41589784
Alignment:
| Q |
211 |
attatggttgggctaccgtctgcagagaacagagaaaatatattgaggacccttttggctaaagagaaggtgcacgggggacttgattttaaggaactcg |
310 |
Q |
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|||||||| || ||||| |||| |||||||| ||||| || || ||||| |||||| | ||||| |||||| || | | |||||||||||||||| | |
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| T |
41589925 |
attatggtaggactaccatctgttgagaacagggaaaagattttaaggactcttttgtcaaaagaaaaggtggacaaagaaattgattttaaggaacttg |
41589826 |
T |
|
| Q |
311 |
caactatgactgaaggatatagtggaagtgatctgaaggttt |
352 |
Q |
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| T |
41589825 |
cgaccatgacagacggatataccggaagtgatttaaaggttt |
41589784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 311 - 351
Target Start/End: Original strand, 45989453 - 45989493
Alignment:
| Q |
311 |
caactatgactgaaggatatagtggaagtgatctgaaggtt |
351 |
Q |
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|||||||||| ||||||||||||||||||||||| |||||| |
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| T |
45989453 |
caactatgacagaaggatatagtggaagtgatcttaaggtt |
45989493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 311 - 351
Target Start/End: Original strand, 44936073 - 44936113
Alignment:
| Q |
311 |
caactatgactgaaggatatagtggaagtgatctgaaggtt |
351 |
Q |
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|||||||||| ||||||||||| ||||||||||| |||||| |
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| T |
44936073 |
caactatgacagaaggatatagcggaagtgatcttaaggtt |
44936113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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