View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20967_low_7 (Length: 497)

Name: NF20967_low_7
Description: NF20967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20967_low_7
NF20967_low_7
[»] chr7 (10 HSPs)
chr7 (10-431)||(23165273-23165712)
chr7 (268-312)||(35238206-35238250)
chr7 (147-190)||(14821566-14821609)
chr7 (147-190)||(15268572-15268615)
chr7 (273-327)||(38134413-38134467)
chr7 (281-326)||(44172898-44172943)
chr7 (146-175)||(48957895-48957924)
chr7 (284-332)||(18678157-18678205)
chr7 (437-480)||(23165237-23165278)
chr7 (388-456)||(44172872-44172940)
[»] chr6 (4 HSPs)
chr6 (388-434)||(4859117-4859163)
chr6 (142-175)||(2730835-2730868)
chr6 (261-314)||(10031556-10031609)
chr6 (115-174)||(26373086-26373146)
[»] chr4 (6 HSPs)
chr4 (104-173)||(13298521-13298591)
chr4 (268-327)||(37496697-37496756)
chr4 (278-328)||(18513247-18513297)
chr4 (268-314)||(34589726-34589772)
chr4 (283-332)||(28158016-28158065)
chr4 (388-444)||(18513235-18513291)
[»] chr2 (6 HSPs)
chr2 (278-332)||(40681985-40682039)
chr2 (268-327)||(33884044-33884103)
chr2 (278-328)||(18570975-18571025)
chr2 (146-175)||(28044711-28044740)
chr2 (282-327)||(44605146-44605191)
chr2 (388-432)||(40681991-40682035)
[»] chr3 (2 HSPs)
chr3 (280-332)||(9210827-9210879)
chr3 (289-326)||(21110767-21110804)
[»] chr5 (7 HSPs)
chr5 (147-190)||(17501053-17501096)
chr5 (282-332)||(39424648-39424698)
chr5 (145-190)||(17755215-17755260)
chr5 (278-314)||(2039869-2039905)
chr5 (273-329)||(10067023-10067079)
chr5 (278-314)||(11596475-11596511)
chr5 (278-314)||(28296331-28296367)
[»] scaffold0004 (1 HSPs)
scaffold0004 (388-446)||(92816-92874)
[»] chr8 (2 HSPs)
chr8 (282-332)||(1639497-1639547)
chr8 (258-324)||(34201056-34201122)
[»] chr1 (3 HSPs)
chr1 (145-175)||(1118942-1118972)
chr1 (278-328)||(40176606-40176656)
chr1 (146-174)||(41551544-41551572)
[»] scaffold0504 (1 HSPs)
scaffold0504 (281-314)||(8717-8750)


Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 10 - 431
Target Start/End: Complemental strand, 23165712 - 23165273
Alignment:
Q  10 ggacatcatccatccaataccattttttcggtggaaatcataaacaagcagtgttgtcaaatatcggccatagcagtgatataacactatacagtgtagc 109  Q
    ||||||||| ||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  23165712 ggacatcattcatccaataccattttt-cggtggaactcataaacaagcaatgttgtcaaatatcggccatagcagtgatataacactatacagtgtagc 23165614  T
Q  110 agaatttgaacgaatcactattgctatgtgaaacgtatttagtacaaagtgttgtcaaatagtggcgctgtagcattgtaggtctgaaatttgaataaac 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  23165613 agaatttgaacgaatcactattgctatgtgaaacgtatttagtacaaagtgttgtcaaatagtggcgctgtagcattgtaggtctgaaatttgaacaaac 23165514  T
Q  210 tactataaaccttgatccacatttgacaacacgagtaacctatgaagtac-agacaccaacacattgaaaccgataatattttgagaaaatg-------- 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||            
T  23165513 tactataaaccttgatccacatttgacaacacgagtaacctatgaagtactagacaccaacacattgaaaccgataatattttgagaaaatgacatgatt 23165414  T
Q  301 ----------acatgattcaatgtgattacatgtgtcaatgtgatctacatttgactacaagggtaacctatgaagtaccgacaccgacacagtgacaat 390  Q
              ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||| |||||||    
T  23165413 caatgtgattacatgattcaatgtgattacatgtgtcaatgtgatctacatttgacttcaagggtaacctatgaagtaccaacaacgacacattgacaat 23165314  T
Q  391 aatttgagaaaatgacatgatccaatgtgattacacgtgtc 431  Q
    ||| ||||||||||||||||| ||||||||||||| |||||    
T  23165313 aatctgagaaaatgacatgattcaatgtgattacatgtgtc 23165273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 35238250 - 35238206
Alignment:
Q  268 acacattgaaaccgataatattttgagaaaatgacatgattcaat 312  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||    
T  35238250 acacattgacaccgataatattttgagaaaatgacataattcaat 35238206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 190
Target Start/End: Original strand, 14821566 - 14821609
Alignment:
Q  147 tttagtacaaagtgttgtcaaatagtggcgctgtagcattgtag 190  Q
    |||||||||||||| |||||||||||| |||| |||||||||||    
T  14821566 tttagtacaaagtgctgtcaaatagtgacgctatagcattgtag 14821609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 190
Target Start/End: Original strand, 15268572 - 15268615
Alignment:
Q  147 tttagtacaaagtgttgtcaaatagtggcgctgtagcattgtag 190  Q
    |||||||||||||| |||||||||||| |||| |||||||||||    
T  15268572 tttagtacaaagtgctgtcaaatagtgacgctatagcattgtag 15268615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 327
Target Start/End: Complemental strand, 38134467 - 38134413
Alignment:
Q  273 ttgaaaccgataatattttgagaaaatgacatgattcaatgtgattacatgtgtc 327  Q
    |||| |||||||||| |||||||||||||||| ||||||||| || | |||||||    
T  38134467 ttgacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgtc 38134413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 326
Target Start/End: Complemental strand, 44172943 - 44172898
Alignment:
Q  281 gataatattttgagaaaatgacatgattcaatgtgattacatgtgt 326  Q
    ||||||| |||||||||||||||| ||||||||| || ||||||||    
T  44172943 gataataatttgagaaaatgacataattcaatgtaatcacatgtgt 44172898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 175
Target Start/End: Original strand, 48957895 - 48957924
Alignment:
Q  146 atttagtacaaagtgttgtcaaatagtggc 175  Q
    ||||||||||||||||||||||||||||||    
T  48957895 atttagtacaaagtgttgtcaaatagtggc 48957924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 284 - 332
Target Start/End: Original strand, 18678157 - 18678205
Alignment:
Q  284 aatattttgagaaaatgacatgattcaatgtgattacatgtgtcaatgt 332  Q
    ||||||||||||||||||||| ||||||| | || || |||||||||||    
T  18678157 aatattttgagaaaatgacataattcaatataatcacgtgtgtcaatgt 18678205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 437 - 480
Target Start/End: Complemental strand, 23165278 - 23165237
Alignment:
Q  437 tgtgtcggtgttactgacacaagtcagataccggacacgcaact 480  Q
    ||||||||||||| ||||||  ||||||||||||||||||||||    
T  23165278 tgtgtcggtgttaatgacac--gtcagataccggacacgcaact 23165237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 456
Target Start/End: Complemental strand, 44172940 - 44172872
Alignment:
Q  388 aataatttgagaaaatgacatgatccaatgtgattacacgtgtcagttttgtgtcggtgttactgacac 456  Q
    ||||||||||||||||||||| || |||||| || ||| ||||  || |||||| ||||| ||||||||    
T  44172940 aataatttgagaaaatgacataattcaatgtaatcacatgtgtttgtgttgtgttggtgtcactgacac 44172872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 434
Target Start/End: Complemental strand, 4859163 - 4859117
Alignment:
Q  388 aataatttgagaaaatgacatgatccaatgtgattacacgtgtcagt 434  Q
    ||||||||||||||||||||| ||||||||| || ||||||||||||    
T  4859163 aataatttgagaaaatgacataatccaatgtaatcacacgtgtcagt 4859117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 142 - 175
Target Start/End: Complemental strand, 2730868 - 2730835
Alignment:
Q  142 acgtatttagtacaaagtgttgtcaaatagtggc 175  Q
    ||||||||||||||||||||||||||||||||||    
T  2730868 acgtatttagtacaaagtgttgtcaaatagtggc 2730835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 261 - 314
Target Start/End: Original strand, 10031556 - 10031609
Alignment:
Q  261 gacaccaacacattgaaaccgataatattttgagaaaatgacatgattcaatgt 314  Q
    ||||| ||||| |||| |||||||| |||||||||||||||||| |||||||||    
T  10031556 gacacaaacacgttgacaccgataaaattttgagaaaatgacataattcaatgt 10031609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 115 - 174
Target Start/End: Original strand, 26373086 - 26373146
Alignment:
Q  115 ttgaacgaatcactattgctatgtgaaacg-tatttagtacaaagtgttgtcaaatagtgg 174  Q
    |||||| | ||||||||| | ||||| ||| ||||||||||||||||||||||||||||||    
T  26373086 ttgaacaactcactattgttctgtgatacgctatttagtacaaagtgttgtcaaatagtgg 26373146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 173
Target Start/End: Original strand, 13298521 - 13298591
Alignment:
Q  104 tgtagcagaatttgaacgaatcactattgctatgtgaaacg-tatttagtacaaagtgttgtcaaatagtg 173  Q
    |||||| |||||||||| ||||||||||| | ||||| | | |||||||||||||||| ||||||||||||    
T  13298521 tgtagcggaatttgaacaaatcactattgttctgtgatatgctatttagtacaaagtgctgtcaaatagtg 13298591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 327
Target Start/End: Original strand, 37496697 - 37496756
Alignment:
Q  268 acacattgaaaccgataatattttgagaaaatgacatgattcaatgtgattacatgtgtc 327  Q
    |||| |||| ||||||||| ||||||||||||||||| ||||||||| || ||| |||||    
T  37496697 acacgttgacaccgataattttttgagaaaatgacataattcaatgtaatcacaagtgtc 37496756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 328
Target Start/End: Complemental strand, 18513297 - 18513247
Alignment:
Q  278 accgataatattttgagaaaatgacatgattcaatgtgattacatgtgtca 328  Q
    |||||||||| |||||||||||||||| ||||||||| || | ||||||||    
T  18513297 accgataataatttgagaaaatgacataattcaatgtaatcatatgtgtca 18513247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 314
Target Start/End: Complemental strand, 34589772 - 34589726
Alignment:
Q  268 acacattgaaaccgataatattttgagaaaatgacatgattcaatgt 314  Q
    ||||||||| |||||||| | |||||||||||||||| |||||||||    
T  34589772 acacattgacaccgataacaatttgagaaaatgacataattcaatgt 34589726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 332
Target Start/End: Original strand, 28158016 - 28158065
Alignment:
Q  283 taatattttgagaaaatgacatgattcaatgtgattacatgtgtcaatgt 332  Q
    ||||| ||||| |||||||||||||| ||||| |||| ||||||||||||    
T  28158016 taataatttgaaaaaatgacatgatttaatgtaattatatgtgtcaatgt 28158065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 444
Target Start/End: Complemental strand, 18513291 - 18513235
Alignment:
Q  388 aataatttgagaaaatgacatgatccaatgtgattacacgtgtcagttttgtgtcgg 444  Q
    ||||||||||||||||||||| || |||||| || | | |||||||| |||||||||    
T  18513291 aataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgttgtgtcgg 18513235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 278 - 332
Target Start/End: Original strand, 40681985 - 40682039
Alignment:
Q  278 accgataatattttgagaaaatgacatgattcaatgtgattacatgtgtcaatgt 332  Q
    |||||||||| |||||||||||||||| ||||||||| ||| || ||||||||||    
T  40681985 accgataataatttgagaaaatgacataattcaatgtaattgcacgtgtcaatgt 40682039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 327
Target Start/End: Original strand, 33884044 - 33884103
Alignment:
Q  268 acacattgaaaccgataatattttgagaaaatgacatgattcaatgtgattacatgtgtc 327  Q
    |||||| || |||||||| ||| |||||||||||||||||||| ||| |||||| |||||    
T  33884044 acacatcgataccgataaaattgtgagaaaatgacatgattcagtgtaattacaagtgtc 33884103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 328
Target Start/End: Original strand, 18570975 - 18571025
Alignment:
Q  278 accgataatattttgagaaaatgacatgattcaatgtgattacatgtgtca 328  Q
    |||||||||| |||||||||||||||| ||||||||| || | ||||||||    
T  18570975 accgataataatttgagaaaatgacataattcaatgtaatcatatgtgtca 18571025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 175
Target Start/End: Complemental strand, 28044740 - 28044711
Alignment:
Q  146 atttagtacaaagtgttgtcaaatagtggc 175  Q
    ||||||||||||||||||||||||||||||    
T  28044740 atttagtacaaagtgttgtcaaatagtggc 28044711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 327
Target Start/End: Complemental strand, 44605191 - 44605146
Alignment:
Q  282 ataatattttgagaaaatgacatgattcaatgtgattacatgtgtc 327  Q
    |||||| ||||||||||| |||| ||||||||| ||||||||||||    
T  44605191 ataataatttgagaaaataacataattcaatgtaattacatgtgtc 44605146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 432
Target Start/End: Original strand, 40681991 - 40682035
Alignment:
Q  388 aataatttgagaaaatgacatgatccaatgtgattacacgtgtca 432  Q
    ||||||||||||||||||||| || |||||| ||| |||||||||    
T  40681991 aataatttgagaaaatgacataattcaatgtaattgcacgtgtca 40682035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 332
Target Start/End: Complemental strand, 9210879 - 9210827
Alignment:
Q  280 cgataatattttgagaaaatgacatgattcaatgtgattacatgtgtcaatgt 332  Q
    |||||||| |||||||||||||||| ||||||||  || ||||||||||||||    
T  9210879 cgataataatttgagaaaatgacataattcaatggaatcacatgtgtcaatgt 9210827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 326
Target Start/End: Complemental strand, 21110804 - 21110767
Alignment:
Q  289 tttgagaaaatgacatgattcaatgtgattacatgtgt 326  Q
    |||||||||||||||||||| ||||| |||||||||||    
T  21110804 tttgagaaaatgacatgatttaatgtaattacatgtgt 21110767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 190
Target Start/End: Complemental strand, 17501096 - 17501053
Alignment:
Q  147 tttagtacaaagtgttgtcaaatagtggcgctgtagcattgtag 190  Q
    |||||||||||||| |||||||||||| |||| |||||||||||    
T  17501096 tttagtacaaagtgctgtcaaatagtgacgctatagcattgtag 17501053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 332
Target Start/End: Original strand, 39424648 - 39424698
Alignment:
Q  282 ataatattttgagaaaatgacatgattcaatgtgattacatgtgtcaatgt 332  Q
    |||||| ||||||||||||||||||||||||||  | |||| |||||||||    
T  39424648 ataataatttgagaaaatgacatgattcaatgtattcacatctgtcaatgt 39424698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 190
Target Start/End: Complemental strand, 17755260 - 17755215
Alignment:
Q  145 tatttagtacaaagtgttgtcaaatagtggcgctgtagcattgtag 190  Q
    ||||||||||||||||||||||||||| ||| || ||||| |||||    
T  17755260 tatttagtacaaagtgttgtcaaatagaggcactatagcactgtag 17755215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 2039905 - 2039869
Alignment:
Q  278 accgataatattttgagaaaatgacatgattcaatgt 314  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  2039905 accggtaataatttgagaaaatgacatgattcaatgt 2039869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 273 - 329
Target Start/End: Complemental strand, 10067079 - 10067023
Alignment:
Q  273 ttgaaaccgataatattttgagaaaatgacatgattcaatgtgattacatgtgtcaa 329  Q
    |||||||| ||||||  |||| ||||||||||||| |||||| || |||||||||||    
T  10067079 ttgaaaccaataataaattgacaaaatgacatgatacaatgtaatcacatgtgtcaa 10067023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 11596511 - 11596475
Alignment:
Q  278 accgataatattttgagaaaatgacatgattcaatgt 314  Q
    |||||||||| |||||||||||||||| |||||||||    
T  11596511 accgataataatttgagaaaatgacataattcaatgt 11596475  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 314
Target Start/End: Original strand, 28296331 - 28296367
Alignment:
Q  278 accgataatattttgagaaaatgacatgattcaatgt 314  Q
    |||||||||| |||||||||||||||| |||||||||    
T  28296331 accgataataatttgagaaaatgacataattcaatgt 28296367  T

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Target: scaffold0004 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 388 - 446
Target Start/End: Original strand, 92816 - 92874
Alignment:
Q  388 aataatttgagaaaatgacatgatccaatgtgattacacgtgtcagttttgtgtcggtg 446  Q
    |||||||||||||||| |||| || || ||| |||||| ||||||||||||||| ||||    
T  92816 aataatttgagaaaattacataattcagtgtaattacaagtgtcagttttgtgttggtg 92874  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 332
Target Start/End: Original strand, 1639497 - 1639547
Alignment:
Q  282 ataatattttgagaaaatgacatgattcaatgtgattacatgtgtcaatgt 332  Q
    ||||||||||||||||||||||| ||||||||| || || |||||| ||||    
T  1639497 ataatattttgagaaaatgacataattcaatgtaataacgtgtgtcgatgt 1639547  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 324
Target Start/End: Complemental strand, 34201122 - 34201056
Alignment:
Q  258 acagacaccaacacattgaaaccgataatattttgagaaaatgacatgattcaatgtgattacatgt 324  Q
    ||||| ||| ||||||||| ||  |||||| |||||||||||||||| ||||||||| |||| ||||    
T  34201122 acagataccgacacattgacactaataataatttgagaaaatgacataattcaatgtaattatatgt 34201056  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 175
Target Start/End: Original strand, 1118942 - 1118972
Alignment:
Q  145 tatttagtacaaagtgttgtcaaatagtggc 175  Q
    |||||||||||||||||||||||||||||||    
T  1118942 tatttagtacaaagtgttgtcaaatagtggc 1118972  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 328
Target Start/End: Original strand, 40176606 - 40176656
Alignment:
Q  278 accgataatattttgagaaaatgacatgattcaatgtgattacatgtgtca 328  Q
    |||||||| |||||||||||||||| | ||||||||| || ||||||||||    
T  40176606 accgataaaattttgagaaaatgacttcattcaatgtaatcacatgtgtca 40176656  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 146 - 174
Target Start/End: Original strand, 41551544 - 41551572
Alignment:
Q  146 atttagtacaaagtgttgtcaaatagtgg 174  Q
    |||||||||||||||||||||||||||||    
T  41551544 atttagtacaaagtgttgtcaaatagtgg 41551572  T

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Target: scaffold0504 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 314
Target Start/End: Complemental strand, 8750 - 8717
Alignment:
Q  281 gataatattttgagaaaatgacatgattcaatgt 314  Q
    ||||| ||||||||||||||||||||||||||||    
T  8750 gataaaattttgagaaaatgacatgattcaatgt 8717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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