View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20967_low_9 (Length: 421)
Name: NF20967_low_9
Description: NF20967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20967_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 20 - 403
Target Start/End: Original strand, 50916521 - 50916903
Alignment:
| Q |
20 |
acagatagattgtacaggtaagaattctttacaaactcaagtttatcaaacctcctctaggtttatacattaataatgactttattttaatgaatttact |
119 |
Q |
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| T |
50916521 |
acagatagattgtacaggtaagaattctttacaa-ctcaagtttatcaaacctcctctaggtttatacattaataatgactttattttaatgaatttact |
50916619 |
T |
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| Q |
120 |
tgctagagtttaaagcgttctgctgttattagagcttcagatggtttccggcaaagagaccctgcatctcacacaattcacattgtgtcatttttaaata |
219 |
Q |
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| T |
50916620 |
tgctggagtttaaagcgttctgctgttattagagcttcagatggtttccggcaaagagaccctgcatctcacacaattcacattgtgtcatttttaaata |
50916719 |
T |
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| Q |
220 |
aataggagttatgtaattgtttgttgtcatgctgagttgtgaatgattgtggtgtaaaacaatttttcattgatattgcatatcctttaatctttcnnnn |
319 |
Q |
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| T |
50916720 |
aataggagttatgtaattgtttgttgtcatgctgagttgtgaatgattgtggtgtaaaacaattttacattgatattgcatatcctttaatctttctttt |
50916819 |
T |
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| Q |
320 |
nnnaatgttgcacacacagccgacttagatagatgatatcttaccttctgatttgtaatgttttgcagcgacaagcccgaatac |
403 |
Q |
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| T |
50916820 |
tttaatgttgcacacacagccgaattagatagatgatatcttaccttctgatttgtaatgttttgcagcgacaagcccgaatac |
50916903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 61 - 204
Target Start/End: Original strand, 42350899 - 42351041
Alignment:
| Q |
61 |
tttatcaaacctcctctaggtttatacattaataatgactttattttaatgaatttacttgctagagtttaaagcgttctgctgttattagagcttcaga |
160 |
Q |
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| T |
42350899 |
tttatgaaacctactctagatttattcaataataaggactttattttaatga-tttacttgatgcagttcaaagcgttcggctgttattagagcatcaga |
42350997 |
T |
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| Q |
161 |
tggtttccggcaaagagaccctgcatctcacacaattcacattg |
204 |
Q |
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| T |
42350998 |
tgatttctggccaagagaccctgcatctcacacaattcacattg |
42351041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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