View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20968_high_1 (Length: 526)
Name: NF20968_high_1
Description: NF20968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20968_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 20 - 428
Target Start/End: Complemental strand, 8912989 - 8912581
Alignment:
| Q |
20 |
tatagccacaattctcacaacatcaccaccttccatagcagcagaatcatctccctacaatatctactacggcacagcagcaagtgcagcaaactacggc |
119 |
Q |
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| T |
8912989 |
tatagccaccattctcacaacatcaccaccttccatagcagcagaatcatctccctacaatatctactacggcacagcagcaagtgcagcaaactacggc |
8912890 |
T |
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| Q |
120 |
ggctacggcggtaactccaataagaaagactcagcagaatacatttacgacgttccagaaggatggaaggaacgtttaatatcaaaagttgaaaaaggta |
219 |
Q |
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| T |
8912889 |
ggctacggcggtaactccaacaagaaagactcagcagaatacatctacgacgttccagaaggttggaaggaacgtttaatatcaaaagtagaaaaaggta |
8912790 |
T |
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| Q |
220 |
caaatggaacagacagtgaattctacaatccaaagaagagaacagagaaagaatatctaactttcctttctgggtttcgtcagttagcaccaaaagatgc |
319 |
Q |
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| T |
8912789 |
caaatggaacagacagtgaattctacaatccaaagaagagaacagagaaagaatatctaactttcctttctgggtttcgtcagttagcaccaaaagatgc |
8912690 |
T |
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| Q |
320 |
tgttttgaacaacttagcactttctgatgtgaatttgcaagatataatcagtggtgctgataatgtgagttctgaagaagtgaaagatgaaaatggtcaa |
419 |
Q |
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| T |
8912689 |
tgttttgaacaacttagcactttctgatgtgaatttgcaagatattattagtggtgctgataatgtgagttctgaagaagtgaaagatgaaaatggtcaa |
8912590 |
T |
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| Q |
420 |
gtttattat |
428 |
Q |
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| T |
8912589 |
gtttattat |
8912581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 465 - 526
Target Start/End: Complemental strand, 8913061 - 8913000
Alignment:
| Q |
465 |
caccatatcaaaaccactcctctcattcaaactcaaacaacctctaaccaccaccttaacag |
526 |
Q |
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| T |
8913061 |
caccatatcaaaaccactcctctcattcaaactcaaacaacctctaaccaccaccttaacag |
8913000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 422 - 470
Target Start/End: Original strand, 8912519 - 8912567
Alignment:
| Q |
422 |
ttattattagcacaagtaacagaaatcaagctatgataagcaacaccat |
470 |
Q |
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| T |
8912519 |
ttattattagcacaagtaacagaaatcaagctatgataagcaacaccat |
8912567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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