View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20968_high_10 (Length: 391)
Name: NF20968_high_10
Description: NF20968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20968_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 335; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 18 - 373
Target Start/End: Original strand, 37361770 - 37362129
Alignment:
| Q |
18 |
tggcatgcgaaggataaacttaacacgaatattaacatttttaaccgccatg----acagtttccttatgtcacgaagaatgaaacgcgtaatcaagtga |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37361770 |
tggcatgcgaaggataaacttaacacgaatattaacatttttaaccgccatgcatgacagtttccttatgtcacgaagaatgaaacgcgtaatcaagtga |
37361869 |
T |
|
| Q |
114 |
aagagataagatctaaggaagccccaatacaatcagtagaaggtgaagtttagaacttattattttttgggttatgtgatctttcttccttgtgttttag |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37361870 |
aagagataagatctaaggaagccccaatacaatcagtagaaggtgaagtttagaacttattattttttgggttatgtgatctttcttccttgtattttag |
37361969 |
T |
|
| Q |
214 |
tactcataatgcaagatggacactgcaggtgtatcttcggctgacatcagctcttggattgcgatgggaagaaaaggagaagtgtatttggctttcttca |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
37361970 |
tactcataatgcaagatggacactgcaggtgtatcttcggctgacatcagctcttggattgcgacgggaagaaaaggagaagtgtatttggctttcttca |
37362069 |
T |
|
| Q |
314 |
atctaagtgaacaaaagacaccaatatatgcacatagatcagatttgtctaaggctttta |
373 |
Q |
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| T |
37362070 |
atctaagtgaacaaaagacaccaatatatgcacatagatcagatttgtctaaggctttta |
37362129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 18 - 373
Target Start/End: Complemental strand, 37366291 - 37365932
Alignment:
| Q |
18 |
tggcatgcgaaggataaacttaacacgaatattaacatttttaaccgccatg----acagtttccttatgtcacgaagaatgaaacgcgtaatcaagtga |
113 |
Q |
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| T |
37366291 |
tggcatgcgaaggataaacttaacaagaatattaacatttttaaccgccatgcatgacagtttccttatgtcacgaagaatgaaacgcgtaatcaagtga |
37366192 |
T |
|
| Q |
114 |
aagagataagatctaaggaagccccaatacaatcagtagaaggtgaagtttagaacttattattttttgggttatgtgatctttcttccttgtgttttag |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37366191 |
aagagataagatctaaggaagccccaatacaatcagtagaaggtgaagtttagaacttattattttttgggttatgtgatctttcttccttgtattttag |
37366092 |
T |
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| Q |
214 |
tactcataatgcaagatggacactgcaggtgtatcttcggctgacatcagctcttggattgcgatgggaagaaaaggagaagtgtatttggctttcttca |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
37366091 |
tactcataatgcaagatggacactgcaggtgtatcttcggctgacatcagctcttggattgcgacgggaagaaaaggagaagtgtatttggctttcttca |
37365992 |
T |
|
| Q |
314 |
atctaagtgaacaaaagacaccaatatatgcacatagatcagatttgtctaaggctttta |
373 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
37365991 |
atctaagtgaacaaaagacaccaatatatgcacatagatcaaatttgtctaaggctttta |
37365932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 263 - 359
Target Start/End: Complemental strand, 37408567 - 37408471
Alignment:
| Q |
263 |
gctcttggattgcgatgggaagaaaaggagaagtgtatttggctttcttcaatctaagtgaacaaaagacaccaatatatgcacatagatcagattt |
359 |
Q |
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||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||| | | ||||||||| |
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| T |
37408567 |
gctcttggattgcaacgggaagaaaaggagaagtgtatttggctttcttcaatctaaatgaacagaagacaccagtatatgcaaagacatcagattt |
37408471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 263 - 367
Target Start/End: Original strand, 37377773 - 37377877
Alignment:
| Q |
263 |
gctcttggattgcgatgggaagaaaaggagaagtgtatttggctttcttcaatctaagtgaacaaaagacaccaatatatgcacatagatcagatttgtc |
362 |
Q |
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||||||||||||| | ||| ||||| ||||||||||||||||||||||||||||||| |||||| ||||||||| |||| ||| | | |||||||||| | |
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| T |
37377773 |
gctcttggattgcaacggggagaaacggagaagtgtatttggctttcttcaatctaaatgaacagaagacaccagtatacgcaaagacatcagatttggc |
37377872 |
T |
|
| Q |
363 |
taagg |
367 |
Q |
| |
|
||||| |
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|
| T |
37377873 |
taagg |
37377877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 265 - 360
Target Start/End: Original strand, 37385187 - 37385282
Alignment:
| Q |
265 |
tcttggattgcgatgggaagaaaaggagaagtgtatttggctttcttcaatctaagtgaacaaaagacaccaatatatgcacatagatcagatttg |
360 |
Q |
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||||||||||| | ||| ||||| |||||||||||||| |||||||||||||||| |||||| ||||||||| |||||||| | | |||||||||| |
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| T |
37385187 |
tcttggattgcaacggggagaaacggagaagtgtatttagctttcttcaatctaaatgaacagaagacaccagtatatgcaaagacatcagatttg |
37385282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 89
Target Start/End: Original strand, 37383969 - 37384029
Alignment:
| Q |
29 |
ggataaacttaacacgaatattaacatttttaaccgccatgacagtttccttatgtcacga |
89 |
Q |
| |
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||||||||||| ||||||| |||||||||| || || |||||||||||| |||||||||| |
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| T |
37383969 |
ggataaacttatcacgaatcataacattttttactgcaatgacagtttccctatgtcacga |
37384029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 263 - 345
Target Start/End: Complemental strand, 41227672 - 41227590
Alignment:
| Q |
263 |
gctcttggattgcgatgggaagaaaaggagaagtgtatttggctttcttcaatctaagtgaacaaaagacaccaatatatgca |
345 |
Q |
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| T |
41227672 |
gctcttggattgcaacaggaagaaaaggagaagtatatatggctttcttcaatctaaatgaacagaagacaccaatatatgca |
41227590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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