View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20968_high_11 (Length: 317)
Name: NF20968_high_11
Description: NF20968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20968_high_11 |
 | |
|
| [»] scaffold0009 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 80 - 259
Target Start/End: Complemental strand, 4805988 - 4805809
Alignment:
| Q |
80 |
agtttcattaaatattcatgattgtattgcaaatatacagagaaactgacattgtatatgtatcattgaaaataaatagaaagacaaggcctatcatttc |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4805988 |
agtttcattaaatattcatgattgtattgcaaatatacagagaaactgacattgtatatgtatcattgaaaataaatagaaagacaaggcctatcatttc |
4805889 |
T |
|
| Q |
180 |
aatatggtattagtaagcataggtactgatcctaaaccctaattgtgtcgccgctctcctcacataaacggctgcactac |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4805888 |
aatatggtattagtaagcataggtactgatcctaaaccctaattgtgtcgccgctctcctcacataaacggctgcactac |
4805809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 84 - 183
Target Start/End: Original strand, 22949977 - 22950076
Alignment:
| Q |
84 |
tcattaaatattcatgattgtattgcaaatatacagagaaactgacattgtatatgtatcattgaaaataaatagaaagacaaggcctatcatttcaata |
183 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||||||| |||| |||||||||||||||||| ||||||||| |||||||||||||| ||||| |
|
|
| T |
22949977 |
tcattaaatagtcatgattgtatagcaaatatacagagaaacttacatcagatatgtatcattgaaaatcaatagaaaggcaaggcctatcattccaata |
22950076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 84 - 183
Target Start/End: Complemental strand, 10533180 - 10533080
Alignment:
| Q |
84 |
tcattaaatattcatgattgtattgcaaatatacagagaaactgacattgtatatgtatcatt-gaaaataaatagaaagacaaggcctatcatttcaat |
182 |
Q |
| |
|
|||||||||| |||||||||||| ||||||| ||| |||| |||||||||||||||||||||| |||||| ||||||||| |||||||||||||| |||| |
|
|
| T |
10533180 |
tcattaaatagtcatgattgtatagcaaatagacacagaatctgacattgtatatgtatcattggaaaatcaatagaaaggcaaggcctatcattccaat |
10533081 |
T |
|
| Q |
183 |
a |
183 |
Q |
| |
|
| |
|
|
| T |
10533080 |
a |
10533080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 7e-49; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 84 - 256
Target Start/End: Complemental strand, 25628170 - 25627997
Alignment:
| Q |
84 |
tcattaaatattcatgattgtattgcaaatatacagagaaactgacattgtatatgtatcattg-aaaataaatagaaagacaagg-cctatcatttcaa |
181 |
Q |
| |
|
|||||||||| |||||||||||| | ||||| ||| |||| ||||||||||||||||||||||| ||||| ||||||||| ||||| ||||||||| ||| |
|
|
| T |
25628170 |
tcattaaatagtcatgattgtatagtaaatagacacagaatctgacattgtatatgtatcattggaaaatcaatagaaaggcaagggcctatcattccaa |
25628071 |
T |
|
| Q |
182 |
tatggtattagtaagcataggtactgatcctaaaccctaattgtgtcgccgctctcctcacataaacggctgcac |
256 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||| ||||||||| |
|
|
| T |
25628070 |
tatggtatcagtaagcataggtactgatcctaaa-cctaattgtgccgccgctctactcacataaccggctgcac |
25627997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 84 - 168
Target Start/End: Complemental strand, 25623618 - 25623533
Alignment:
| Q |
84 |
tcattaaatattcatgattgtattgcaaatatacagagaaactgacattgtatatgtatcatt-gaaaataaatagaaagacaagg |
168 |
Q |
| |
|
|||||||||| |||||||||||| | ||||| ||| | || |||||||||||||||||||||| |||||| ||||||||| ||||| |
|
|
| T |
25623618 |
tcattaaatagtcatgattgtatagtaaatagacacaaaatctgacattgtatatgtatcattggaaaatcaatagaaaggcaagg |
25623533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 84 - 256
Target Start/End: Original strand, 87551 - 87723
Alignment:
| Q |
84 |
tcattaaatattcatgattgtattgcaaatatacagagaaactgacattgtatatgtatcattg-aaaataaatagaaagacaaggcctatcatttcaat |
182 |
Q |
| |
|
|||||||||| || |||||| || ||||||| ||| |||| |||||||||||||| |||||||| ||||| ||||||||| |||| ||||||||| |||| |
|
|
| T |
87551 |
tcattaaatagtcgtgattgcatagcaaatagacacagaatctgacattgtatatttatcattggaaaatcaatagaaaggcaagacctatcattccaat |
87650 |
T |
|
| Q |
183 |
atggtattagtaagcataggtactgatcctaaaccctaattgtgtcgccgctctcctcacataaacggctgcac |
256 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
87651 |
atggtatcagtaagcataggtactgatcctaaa-cctaattgtgccgccgctctcctcacataaccggctgcac |
87723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 84 - 183
Target Start/End: Original strand, 92208 - 92308
Alignment:
| Q |
84 |
tcattaaatattcatgattgtattgcaaatatacagagaaactgacattgtatatgtatcatt-gaaaataaatagaaagacaaggcctatcatttcaat |
182 |
Q |
| |
|
|||||||||| |||||||||||| ||||||| ||| |||| |||||||||||||||||||||| |||||| ||||||||| |||||||||||||| |||| |
|
|
| T |
92208 |
tcattaaatagtcatgattgtatagcaaatagacacagaatctgacattgtatatgtatcattggaaaatcaatagaaaggcaaggcctatcattccaat |
92307 |
T |
|
| Q |
183 |
a |
183 |
Q |
| |
|
| |
|
|
| T |
92308 |
a |
92308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 84 - 183
Target Start/End: Complemental strand, 47249270 - 47249170
Alignment:
| Q |
84 |
tcattaaatattcatgattgtattgcaaatatacagagaaactgacattgtatatgtatcatt-gaaaataaatagaaagacaaggcctatcatttcaat |
182 |
Q |
| |
|
|||||||||| |||||||||||| || |||| ||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||| |||| |
|
|
| T |
47249270 |
tcattaaatagtcatgattgtatagctaatagacagagaaactgacattgtatatgtatcattagaaaatcaatagaaaggcaaggcctatcattccaat |
47249171 |
T |
|
| Q |
183 |
a |
183 |
Q |
| |
|
| |
|
|
| T |
47249170 |
a |
47249170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 84 - 183
Target Start/End: Original strand, 3955592 - 3955692
Alignment:
| Q |
84 |
tcattaaatattcatgattgtattgcaaatatacagagaaactgacattgtatatgtatcatt-gaaaataaatagaaagacaaggcctatcatttcaat |
182 |
Q |
| |
|
|||||||||| |||||||||||| ||||||| ||| |||| ||||||||| |||||||||||| |||||| ||||||||| ||||||| |||||| |||| |
|
|
| T |
3955592 |
tcattaaatagtcatgattgtatagcaaatagacacagaatctgacattgcatatgtatcattggaaaatcaatagaaaggcaaggccgatcattccaat |
3955691 |
T |
|
| Q |
183 |
a |
183 |
Q |
| |
|
| |
|
|
| T |
3955692 |
a |
3955692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 84 - 183
Target Start/End: Original strand, 30351688 - 30351787
Alignment:
| Q |
84 |
tcattaaatattcatgattgtattgcaaatatacagagaaactgacattgtatatgtatcattgaaaataaatagaaagacaaggcctatcatttcaata |
183 |
Q |
| |
|
|||| ||||| |||||||||||| ||||||||||||| |||| |||||||||||| |||||||||||| ||||||||| |||||||||| || ||||| |
|
|
| T |
30351688 |
tcatgaaatagtcatgattgtatagcaaatatacagataaacagacattgtatatagatcattgaaaatcaatagaaaggtaaggcctatcgttccaata |
30351787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 30351956 - 30352012
Alignment:
| Q |
127 |
gacattgtatatgtatcattgaaaataaatagaaagacaaggcctatcatttcaata |
183 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||| |||||||||| || ||||| |
|
|
| T |
30351956 |
gacattgtatatagatcattgaaaatcaatagaaaggtaaggcctatcgttccaata |
30352012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University