View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20968_high_13 (Length: 300)
Name: NF20968_high_13
Description: NF20968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20968_high_13 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 300
Target Start/End: Complemental strand, 2601592 - 2601311
Alignment:
| Q |
19 |
agccatccatgaagaagctcgctacttagacgccctatatcgtcgagatcatcttctccctcaatacttagctgggaggcttcaaacatagcaatgagac |
118 |
Q |
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|||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2601592 |
agccatccatgaagaagctcactactgagatgccctatatcgtcgagatcatcttctccctcaatacttagctgggaggcttcatacatagcaatgagac |
2601493 |
T |
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| Q |
119 |
tcttcacatcctcaccaaatttttcactaaaatttctcttgttacacgtcaagttgacaaatatatctgctcacccggtacatatgatgattagttacta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| || ||||| || ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2601492 |
tcttcacatcctcaccaaatttttcactaaaatttctcttgttaaacatcaagctgtcaaatatatctgctcacccggtacaaatgatgattagttacta |
2601393 |
T |
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| Q |
219 |
tccactaaaacaaagctcattaatcagtgttagtgatatcagaaaaaatgattcgaacaaaatatgtctgtctttaatttct |
300 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||| |||||| | ||||||||||||| ||| ||||||||||| |
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| T |
2601392 |
tccactaaaacaaagctcattaatcagtgttattgatatcagagaaaatgttgcgaacaaaatatgcctgcctttaatttct |
2601311 |
T |
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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 20617090 - 20617213
Alignment:
| Q |
18 |
aagccatccatgaagaagctcgctacttagacgccctatatcgtcgagatcatcttctccctcaatacttagctgggaggcttcaaacatagcaatgaga |
117 |
Q |
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||||||| | ||||||||||| | ||| || ||||| ||| | |||| |||||||||| ||||||||||| ||||| |||||| ||| ||||||||| |
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| T |
20617090 |
aagccatgcttgaagaagctcacaactgaggtaccctaaatcattgagaccatcttctccttcaatacttagttgggatgcttcatacaaggcaatgaga |
20617189 |
T |
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| Q |
118 |
ctcttcacatcctcaccaaatttt |
141 |
Q |
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| T |
20617190 |
cctttcacatcctcaccatatttt |
20617213 |
T |
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