View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20968_high_19 (Length: 257)
Name: NF20968_high_19
Description: NF20968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20968_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 37361721 - 37361473
Alignment:
| Q |
1 |
tattatttgagctgaaatgattaatctcaagtaaggtaggattcgtgataatttcatatgtggcattgtcgatcttcctcacatcgcctccatacataag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37361721 |
tattatttgagctgaaatgattaatctcaagtaaggtaggattcgtgataatttcatatgtggcattgtcgatcttcctcacatcgcctccatacataag |
37361622 |
T |
|
| Q |
101 |
gggagactttgccatagcccacaaagtcatctgtgagataataataaattgatcagaatatatcataatgcatgcaagcacataattgcataaaaatata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37361621 |
gggagactttgccatagcccacaaagtcatctgtgagataataataaattgatcagaatatatcataatgcatgcaagcacataattgcataaaaatata |
37361522 |
T |
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| Q |
201 |
taagaaagtaactcggttgtactattcatcaatacctgtgtcctttgct |
249 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
37361521 |
taagaaagtaactcagttgtactattcatcaatacctgtgtcctttgct |
37361473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 37366340 - 37366588
Alignment:
| Q |
1 |
tattatttgagctgaaatgattaatctcaagtaaggtaggattcgtgataatttcatatgtggcattgtcgatcttcctcacatcgcctccatacataag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37366340 |
tattatttgagctgaaatgattaatctcaagtaaggtaggattcgtgataatttcatatgtggcattgtcgatcttcctcacatcgcctccatacataag |
37366439 |
T |
|
| Q |
101 |
gggagactttgccatagcccacaaagtcatctgtgagataataataaattgatcagaatatatcataatgcatgcaagcacataattgcataaaaatata |
200 |
Q |
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| T |
37366440 |
gggagactttgccatagcccacaaagtcatctgtgagataataataaattgatcagaatatatcataatgcatgcaagcacataattgcataaaaatata |
37366539 |
T |
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| Q |
201 |
taagaaagtaactcggttgtactattcatcaatacctgtgtcctttgct |
249 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
37366540 |
taagaaagtaactcagttgtactattcatcaatacctgtgtcctttgct |
37366588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 37383915 - 37383766
Alignment:
| Q |
1 |
tattatttgagctgaaatgattaatctcaagtaaggtaggattcgtgataatttcatatgtggcattgtcgatcttcctcacatcgcctccatacataag |
100 |
Q |
| |
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||||||| |||||||||||||||||||| |||| ||| |||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||| |
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| T |
37383915 |
tattattggagctgaaatgattaatctctagtagggttggattcgtgataatttcatatgtggccggatcgattctccgcacatcgcctccatacataag |
37383816 |
T |
|
| Q |
101 |
gggagactttgccatagcccacaaagtcatctgtgagataataataaatt |
150 |
Q |
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|||||| ||||||| |||||||| |||||||||||| |||||||| |||| |
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| T |
37383815 |
gggagattttgccaaagcccacagagtcatctgtgatataataatgaatt |
37383766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 37376553 - 37376298
Alignment:
| Q |
1 |
tattatttgagctgaaatgattaatctcaagtaaggtaggattcgtgataatttcatatgtggcattgtcgatcttcctcacatcgcctccatacataag |
100 |
Q |
| |
|
||||||| |||||||||||||||||||| |||| ||| |||||||| |||||||||||||||||| |||||| ||| ||||||||||||||||||||| |
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| T |
37376553 |
tattattggagctgaaatgattaatctctagtagggtcggattcgtcataatttcatatgtggcaggatcgatcctccgcacatcgcctccatacataag |
37376454 |
T |
|
| Q |
101 |
gggagactttgccatagcccacaaagtcatctgtgagataataataaattgatcagaata---tatcataatgcatgc------aagcacataattgcat |
191 |
Q |
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||||| ||||| | |||||||| |||||||||||| |||||||| |||| | | ||||| ||||||||||||||| || ||||| ||||||| |
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| T |
37376453 |
aggagattttgcaaaagcccacagagtcatctgtgatataataatgaattca-ctgaatagtctatcataatgcatgcattgcaaaacacatgattgcat |
37376355 |
T |
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| Q |
192 |
aaaaatatataagaaagtaactcggttgtactattcatca--atacctgtgtccttt |
246 |
Q |
| |
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||| |||||||| |||||||| ||| | ||||| |||| ||||||||||||||| |
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| T |
37376354 |
ggaaagatataagagagtaactcagttatgctatttatcaatatacctgtgtccttt |
37376298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 37408695 - 37408878
Alignment:
| Q |
1 |
tattatttgagctgaaatgattaatctcaagtaaggtaggattcgtgataatttcatatgtggcattgtcgatcttcctcacatcgcctccatacataag |
100 |
Q |
| |
|
||||||||||| ||||| ||||||||| | | |||||||||||||||||||| ||||||||| ||||||||||| || |||||||||||||||||| |
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| T |
37408695 |
tattatttgagttgaaaaaattaatctctggcactgtaggattcgtgataatttcgtatgtggcagggtcgatcttccgcatatcgcctccatacataag |
37408794 |
T |
|
| Q |
101 |
gggagactttgccatagcccacaaagtcatctgtgagataataataaattga-tcagaatatatcataatgcatgcaagcacat |
183 |
Q |
| |
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|||||||||||||| |||||| |||||||||| |||||||| ||| ||| | ||||| | ||||||||||||||||| ||||| |
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| T |
37408795 |
gggagactttgccaaagcccataaagtcatctatgagataacaatgaatccactcagagtctatcataatgcatgcaatcacat |
37408878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 3 - 183
Target Start/End: Original strand, 41228611 - 41228792
Alignment:
| Q |
3 |
ttatttgagctgaaatgattaatctcaagtaaggtaggattcgtgataatttcatatgtggcattgtcgatcttcctcacatcgcctccatacataaggg |
102 |
Q |
| |
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||||| |||||||||| |||||| || || | ||||||||| ||||||||||||||||||||| ||||||||||| || || |||||||||||||||| |
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| T |
41228611 |
ttattagagctgaaataattaatttctagcacggtaggatttgtgataatttcatatgtggcagggtcgatcttccgcatgtcacctccatacataaggg |
41228710 |
T |
|
| Q |
103 |
gagactttgccatagcccacaaagtcatctgtgagataataataaattga-tcagaatatatcataatgcatgcaagcacat |
183 |
Q |
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|||||||||||| |||||| |||||||||| |||||||| ||| |||| | ||| ||| ||||||||||||||||| ||||| |
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| T |
41228711 |
gagactttgccagagcccataaagtcatctatgagataacaatgaattcactcaaaatctatcataatgcatgcaatcacat |
41228792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 72 - 135
Target Start/End: Complemental strand, 39246344 - 39246281
Alignment:
| Q |
72 |
atcttcctcacatcgcctccatacataaggggagactttgccatagcccacaaagtcatctgtg |
135 |
Q |
| |
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||||||| |||||||| |||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
39246344 |
atcttccgtacatcgcccccatacataaggggagactttgccattgcccacagggtcatctgtg |
39246281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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