View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20968_high_21 (Length: 251)
Name: NF20968_high_21
Description: NF20968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20968_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 25996127 - 25995885
Alignment:
| Q |
1 |
cataaagataaatatgaatttaataaaatccactttattcatatttcatttacagttcatatgatttttctaaagtaaattcctcaatccaaggagaggt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
25996127 |
cataaagataaatatgaatttaataaaatccactttattcatattttatttacagttcatatgatttttctaaagtaaattcctcaatc-aaggagaggt |
25996029 |
T |
|
| Q |
101 |
aaatcttataaatatttagagaggcgcataaaaatttataaaattatattatattgttact-----atcactatattcttaaatgcattgattattgtca |
195 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
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| T |
25996028 |
aaatcttaaaaatatttagagaggcgcataaaaatttataaaattatatt-----gttactatcatatcactatattcttaaatgcattgattattgtca |
25995934 |
T |
|
| Q |
196 |
aatgtggataaacttagcctgtaagaattcttaagagttagaataatct |
244 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25995933 |
aatgtggataaacttagcctgtaagaattcttaagagttagaagaatct |
25995885 |
T |
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