View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20968_high_28 (Length: 227)
Name: NF20968_high_28
Description: NF20968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20968_high_28 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 50489764 - 50489984
Alignment:
| Q |
7 |
ctttgcccaaattttcaatctcttctttgtcttcctgtgtacgtttgtagtcagagaagaggtcttgcttctttgtaacataatttgcctcaacaacagt |
106 |
Q |
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| T |
50489764 |
ctttgcccaaattttcaatctcttctttgtcttcctgtgtaagtttgtaggcagagaagaggtcttgcttctttgtaacataatttgcctcaacaacagt |
50489863 |
T |
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| Q |
107 |
ggaacacactggaaaaccattctttgtgttcagggacaagtcgaagttattagtataaacacctgtgacctcctgaaatttttatcagaatatagacagc |
206 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50489864 |
ggaaaacactggaaaaccattctttgtgttcagggacaagtcgaagttattagtataaacacctgtgacctcctgaaatttttatcagaatatagacagc |
50489963 |
T |
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| Q |
207 |
ataagaaaatcattacagaac |
227 |
Q |
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||||||||||||||||||||| |
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| T |
50489964 |
ataagaaaatcattacagaac |
50489984 |
T |
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