View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20968_high_3 (Length: 471)

Name: NF20968_high_3
Description: NF20968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20968_high_3
NF20968_high_3
[»] chr4 (2 HSPs)
chr4 (1-411)||(22894542-22894962)
chr4 (1-411)||(22946210-22946630)
[»] chr5 (1 HSPs)
chr5 (298-355)||(4436143-4436200)
[»] chr2 (1 HSPs)
chr2 (300-352)||(29995463-29995514)


Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 411
Target Start/End: Original strand, 22894542 - 22894962
Alignment:
Q  1 taatgctaaaggctatagagtagtagttttttattttctatttctagtgtcatccggcggtgtgttagccaccatgtttatatatgtgcggcattttaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22894542 taatgctaaaggctatagagtagtagttttttattttctatttctagtgtcatccggcggtgtgttagccaccatgtttatatatgtgcggcattttaat 22894641  T
Q  101 atcttaaatcgcaaacatggacaaaagtgaaaacccaattattgtttgtcttttgtttgcttagtcatggnnnnnnnnnnnnnnnnnnnccttcaaataa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                    |||||||||||    
T  22894642 atcttaaatcgcaaacatggacaaaagtgaaaacccaattattgtttgtcttttgtttgcttagtcatgatttttgtttttatttttttccttcaaataa 22894741  T
Q  201 atagacctttaaatagttttagagaaaggaaaaattaaccctaagagt-----gattagattagattgcatggctttatt-----ttagctgaggttata 290  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||| ||||     ||| |||||||||||    
T  22894742 atagaactttaaatagttttagagaaaggaaaaattaaccctaagagtgattagattagattagattgcatggctatattctagcttaactgaggttata 22894841  T
Q  291 agttcgaaacattgaatatgcaacaatgttaaaatttataaagagagtttgtcgttcatttaagtcaaataaaattcgaggaattaattttactgtcatg 390  Q
    |||||||||||||||| ||||||||| ||||||||| ||||||||||||| |||| ||||||| ||||| |||| |||||| |||||||||||| |||||    
T  22894842 agttcgaaacattgaacatgcaacaacgttaaaattcataaagagagtttatcgtccatttaactcaaacaaaactcgagggattaattttactatcatg 22894941  T
Q  391 cacgaaggacatcctatttat 411  Q
      |||| ||||||||||||||    
T  22894942 tgcgaaagacatcctatttat 22894962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 411
Target Start/End: Original strand, 22946210 - 22946630
Alignment:
Q  1 taatgctaaaggctatagagtagtagttttttattttctatttctagtgtcatccggcggtgtgttagccaccatgtttatatatgtgcggcattttaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22946210 taatgctaaaggctatagagtagtagttttttattttctatttctagtgtcatccggcggtgtgttagccaccatgtttatatatgtgcggcattttaat 22946309  T
Q  101 atcttaaatcgcaaacatggacaaaagtgaaaacccaattattgtttgtcttttgtttgcttagtcatggnnnnnnnnnnnnnnnnnnnccttcaaataa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                    |||||||||||    
T  22946310 atcttaaatcgcaaacatggacaaaagtgaaaacccaattattgtttgtcttttgtttgcttagtcatgatttttgtttttatttttttccttcaaataa 22946409  T
Q  201 atagacctttaaatagttttagagaaaggaaaaattaaccctaagagt-----gattagattagattgcatggctttatt-----ttagctgaggttata 290  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||| ||||     ||| |||||||||||    
T  22946410 atagaactttaaatagttttagagaaaggaaaaattaaccctaagagtgattagattagattagattgcatggctatattctagcttaactgaggttata 22946509  T
Q  291 agttcgaaacattgaatatgcaacaatgttaaaatttataaagagagtttgtcgttcatttaagtcaaataaaattcgaggaattaattttactgtcatg 390  Q
    |||||||||||||||| ||||||||| ||||||||| ||||||||||||| |||| ||||||| ||||| |||| |||||| |||||||||||| |||||    
T  22946510 agttcgaaacattgaacatgcaacaacgttaaaattcataaagagagtttatcgtccatttaactcaaacaaaactcgagggattaattttactatcatg 22946609  T
Q  391 cacgaaggacatcctatttat 411  Q
      |||| ||||||||||||||    
T  22946610 tgcgaaagacatcctatttat 22946630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 298 - 355
Target Start/End: Complemental strand, 4436200 - 4436143
Alignment:
Q  298 aacattgaatatgcaacaatgttaaaatttataaagagagtttgtcgttcatttaagt 355  Q
    ||||||||| ||||||||| || |||||||||||| |||  |||||||||||||||||    
T  4436200 aacattgaacatgcaacaacgtcaaaatttataaaaagatgttgtcgttcatttaagt 4436143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 352
Target Start/End: Complemental strand, 29995514 - 29995463
Alignment:
Q  300 cattgaatatgcaacaatgttaaaatttataaagagagtttgtcgttcattta 352  Q
    ||||||| ||||||||| |||||||||| ||| ||||||||||| ||||||||    
T  29995514 cattgaaaatgcaacaacgttaaaattt-taaggagagtttgtcattcattta 29995463  T

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