View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20968_low_1 (Length: 565)
Name: NF20968_low_1
Description: NF20968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20968_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-125; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 4650794 - 4651050
Alignment:
| Q |
1 |
ttgtacaatttttgtgtctctggtagtgctggtgctgctccttcatcaacccatgcattaaacaatgtttcgttgtatgggttcaccctatcaaatattg |
100 |
Q |
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| T |
4650794 |
ttgtacaatttttgtgtctctggtagtgctggtgctgctccttcatcaacccatgcattaaacaatgtttcgttgtatgggttcaccctatcaaatattg |
4650893 |
T |
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| Q |
101 |
ttagaaaatatattaacaatgttgaacaagaaagaattatgtatgtgcaaattaattaacattaacatggatgcaccctaacatttctagtccttaaaag |
200 |
Q |
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| T |
4650894 |
ttagaaaatatattaacaatgttgaacaagaaagaattatgtatgtgcaaattaattaacattaacatggatgcaccctaacatttctagtccttaaaag |
4650993 |
T |
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| Q |
201 |
tttataaaacacata-nnnnnnngtctccaatgacttgaaattaatatactacaatt |
256 |
Q |
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| T |
4650994 |
tttataaaacacatattttttttgtctccaatgacttgaaattaatatactacaatt |
4651050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 312 - 557
Target Start/End: Original strand, 4651115 - 4651360
Alignment:
| Q |
312 |
aagccaaactgaagttcaataccaaaattagggttagagtatgnnnnnnnnnngattagcatacccaaatccatgtgtggcataataaggaaggttagaa |
411 |
Q |
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| T |
4651115 |
aagccaaactgaagttcaataccaaaattagggttagagtatgaaaaaaaaaagattagcatacccaaatccatgtgtggcataataaggaaggttagaa |
4651214 |
T |
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| Q |
412 |
agtgtagtttcatcaatgtcaaacacccaaaggtctctaccatcttttagattgagagttctagcatagaaaaaaccttcacggttaacaaatttagagt |
511 |
Q |
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| T |
4651215 |
agtgtagtttcatcaatgtcaaacacccaaaggtctctaccatcttttagattgagagttctagcatagaaaaaaccttcacggttaacaaatttagagt |
4651314 |
T |
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| Q |
512 |
cagctctatattggtcaccaagcatatagttaccaacatattcttc |
557 |
Q |
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| T |
4651315 |
cagctctatattggtcaccaagcatatagttaccaacatattcttc |
4651360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 369 - 557
Target Start/End: Complemental strand, 23679018 - 23678822
Alignment:
| Q |
369 |
agcatacccaaatccatgtgtggcataataa----ggaaggttagaaagtgtagtttcatcaatgtcaaacacccaaaggtctctaccatcttt----ta |
460 |
Q |
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| T |
23679018 |
agcatacccaaatccatgtgtagcataattaaattggaaggttagagagtgtagttttatcaatgtcaaagacccaaatgtctctaccatctttctttta |
23678919 |
T |
|
| Q |
461 |
gattgagagttctagcatagaaaaaaccttcacggttaacaaatttagagtcagctctatattggtcaccaagcatatagttaccaacatattcttc |
557 |
Q |
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| T |
23678918 |
gattgagagttctagcatagaaaaaaccttcacggttaacaaatttagagtcagctctatattggtcaccaagcatgtagtttccaacatattcttc |
23678822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 23679520 - 23679421
Alignment:
| Q |
1 |
ttgtacaatttttgtgtctctggtagtgctggtg-----ctgctccttcatcaacccatgcattaaa-caatgtttcgttgtatgggttcaccctatcaa |
94 |
Q |
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| T |
23679520 |
ttgtacaatttttgtgtctctggtagtgctggtgttgtgctgctccttcatcaacccatgcattaaaacaatgtttcgttgtatgggttcaccctatcaa |
23679421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 371 - 553
Target Start/End: Original strand, 4646617 - 4646799
Alignment:
| Q |
371 |
catacccaaatccatgtgtggcataataaggaaggttagaaagtgtagtttcatcaatgtcaaacacccaaaggtctctaccatcttttagattgagagt |
470 |
Q |
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||||||||||||| ||| | |||||||| ||||| || || |||| |||||||||||| ||||| ||||| | |||| ||||| | ||| ||| ||||| |
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| T |
4646617 |
catacccaaatccgtgtttagcataatatggaagatttgatagtgaagtttcatcaatatcaaaaacccatatgtctttaccagttgttatattaagagt |
4646716 |
T |
|
| Q |
471 |
tctagcatagaaaaaaccttcacggttaacaaatttagagtcagctctatattggtcaccaagcatatagttaccaacatatt |
553 |
Q |
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| T |
4646717 |
ctttgcatagaaataaccttcacggttaactgctttagagtcagctctatattgatcacctaacatatagttcccaatatatt |
4646799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 371 - 553
Target Start/End: Complemental strand, 23699225 - 23699043
Alignment:
| Q |
371 |
catacccaaatccatgtgtggcataataaggaaggttagaaagtgtagtttcatcaatgtcaaacacccaaaggtctctaccatcttttagattgagagt |
470 |
Q |
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||||||||||||| ||| | |||||||| ||||| || || || | |||||||||||| ||||| ||||| | |||| ||||| | ||| ||| ||||| |
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| T |
23699225 |
catacccaaatccgtgtttagcataatatggaagatttgatagggaagtttcatcaatatcaaaaacccatatgtctttaccagttgttatattaagagt |
23699126 |
T |
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| Q |
471 |
tctagcatagaaaaaaccttcacggttaacaaatttagagtcagctctatattggtcaccaagcatatagttaccaacatatt |
553 |
Q |
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| T |
23699125 |
ctttgcatagaaataaccttcacggttaactgctttagagtcagctctatattgatcacctaacatatagttcccaatatatt |
23699043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 128 - 214
Target Start/End: Complemental strand, 23679315 - 23679227
Alignment:
| Q |
128 |
aagaaagaattat--gtatgtgcaaattaattaacattaacatggatgcaccctaacatttctagtccttaaaagtttataaaacacat |
214 |
Q |
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||||||||||||| ||||||||||||||| ||||| |||||||||| |||||||| |||||| ||| ||||||||||||||||||||| |
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| T |
23679315 |
aagaaagaattatatgtatgtgcaaattaaataacactaacatggatacaccctaatatttctggtctttaaaagtttataaaacacat |
23679227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 23679380 - 23679330
Alignment:
| Q |
97 |
attgttagaaaatatattaacaatgttgaacaagaaagaattatgtatgtg |
147 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
23679380 |
attgttagaaaatatattaacaatgttaaacaagaaagaattatatatgtg |
23679330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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