View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20968_low_15 (Length: 293)
Name: NF20968_low_15
Description: NF20968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20968_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 22 - 215
Target Start/End: Complemental strand, 39879953 - 39879760
Alignment:
| Q |
22 |
cagcaggaaggttgttattggtgttggtgtcagctcctccttctcctactcctccagacaggtcataaccaagagcatggtcaccgggttttaaaatacg |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39879953 |
cagcaggaaggttgttattggtgttggtgtcagctcctccttctcctactcctccagacaggtcataaccaagagcatggtcaccgggttttaaaatacg |
39879854 |
T |
|
| Q |
122 |
accaagatgagtcctgatttgaaaagttgtgtcattatttccagtatctttcacacgagcaaccacagcatcagctaaacgatattttttggcg |
215 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39879853 |
accaagatgagtcctgatttgaaaagttgtgtcattatttccagtatctttcacacgagcaaccacagcatcagctaaacgatattttttggcg |
39879760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 22 - 215
Target Start/End: Complemental strand, 39726557 - 39726364
Alignment:
| Q |
22 |
cagcaggaaggttgttattggtgttggtgtcagctcctccttctcctactcctccagacaggtcataaccaagagcatggtcaccgggttttaaaatacg |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39726557 |
cagcaggaaggttgttattggtgttggtgtcagctcctccttctcctactcctccagacaggtcataaccaagagcatggtcaccgggttttaagatacg |
39726458 |
T |
|
| Q |
122 |
accaagatgagtcctgatttgaaaagttgtgtcattatttccagtatctttcacacgagcaaccacagcatcagctaaacgatattttttggcg |
215 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39726457 |
accgagatgagtcctgatttgaaaagttgtgtcattatttccagtatctttcacacgagcaaccacagcatcagctaaacgatattttttggcg |
39726364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 22 - 215
Target Start/End: Complemental strand, 38987838 - 38987651
Alignment:
| Q |
22 |
cagcaggaaggttgttattggtgttggtgtcagctcctccttctcctactcctccagacaggtcataaccaagagcatggtcaccgggttttaaaatacg |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38987838 |
cagcaggaaggttgttattggtgttggtgtcagctcctccttctcct------ccagacaggtcataaccaagagcatggtcaccgggttttaagatacg |
38987745 |
T |
|
| Q |
122 |
accaagatgagtcctgatttgaaaagttgtgtcattatttccagtatctttcacacgagcaaccacagcatcagctaaacgatattttttggcg |
215 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38987744 |
accgagatgagtcctgatttgaaaagttgtgtcattatttccagtatctttcacacgagcaaccacagcatcagctaaacgatattttttggcg |
38987651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 22 - 214
Target Start/End: Complemental strand, 40418416 - 40418230
Alignment:
| Q |
22 |
cagcaggaaggttgttattggtgttggtgtcagctcctccttctcctactcctccagacaggtcataaccaagagcatggtcaccgggttttaaaatacg |
121 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40418416 |
cagcaggaaggttgatattgatgttggtgtcagctcctccttctcct------ccagacaggtcataaccaagagcatggtcaccgggttttaaaatacg |
40418323 |
T |
|
| Q |
122 |
accaagatgagtcctgatttgaaaagttgtgtcattatttccagtatctttcacacgagcaaccacagcatcagctaaacgatattttttggc |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
40418322 |
accaagatgagtcctgatttgaaaagttgtgtcattatttccaatatctttcacacgagcaaccacagcatcagctaaacaatattttttggc |
40418230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 77 - 214
Target Start/End: Complemental strand, 3299620 - 3299480
Alignment:
| Q |
77 |
agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtg---tcattatttccagtatctttc |
173 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||| |||||||| |
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|
| T |
3299620 |
agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc |
3299521 |
T |
|
| Q |
174 |
acacgagcaaccacagcatcagctaaacgatattttttggc |
214 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3299520 |
acacgagcaaccatggcatcagctaaacgatattttttggc |
3299480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 77 - 214
Target Start/End: Complemental strand, 3392513 - 3392373
Alignment:
| Q |
77 |
agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtg---tcattatttccagtatctttc |
173 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||| |||||||| |
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| T |
3392513 |
agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc |
3392414 |
T |
|
| Q |
174 |
acacgagcaaccacagcatcagctaaacgatattttttggc |
214 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
3392413 |
acacgagcaaccatggcatcagctaaacgatattttttggc |
3392373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 70 - 211
Target Start/End: Complemental strand, 39399950 - 39399809
Alignment:
| Q |
70 |
ctcctccagacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtgtcattatttccagtatc |
169 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
39399950 |
ctcctccagacaagtcataaccaagagcatagtcaccggattttaaaatatgaccaagatgagtcctgatttgaaaagttgtgtcattatttccaaaatt |
39399851 |
T |
|
| Q |
170 |
tttcacacgagcaaccacagcatcagctaaacgatatttttt |
211 |
Q |
| |
|
|| ||||||||||||||| |||||||||||||| |||||||| |
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|
| T |
39399850 |
ttccacacgagcaaccacggcatcagctaaacggtatttttt |
39399809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 22 - 214
Target Start/End: Complemental strand, 39168985 - 39168793
Alignment:
| Q |
22 |
cagcaggaaggttgttattggtgttggtgtcagctcctccttctcctactcctccagacaggtcataaccaagagcatggtcaccgggttttaaaatacg |
121 |
Q |
| |
|
|||||||||||| | |||| | ||||||| |||||||||| || || | |||||||| ||||||||||||||||| |||||||| |||||||||| | |
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|
| T |
39168985 |
cagcaggaaggtcgccattgatattggtgttagctcctcctccttctttacgtccagacaagtcataaccaagagcatagtcaccggattttaaaatatg |
39168886 |
T |
|
| Q |
122 |
accaagatgagtcctgatttgaaaagttgtgtcattatttccagtatctttcacacgagcaaccacagcatcagctaaacgatattttttggc |
214 |
Q |
| |
|
||| |||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||| |||||||||||||| |
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|
| T |
39168885 |
acctagatgagttttgatttgaaaagttgtgtcattatttccaaaatcttccacacgagcaaccacggcatcagctaaccgatattttttggc |
39168793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 70 - 214
Target Start/End: Original strand, 1163680 - 1163824
Alignment:
| Q |
70 |
ctcctccagacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtg-tcattatttccagtat |
168 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||| ||| |
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|
| T |
1163680 |
ctccttcaggcaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaag-tgtgattattatttccaatat |
1163778 |
T |
|
| Q |
169 |
ctttcacacgagcaaccacagcatcagctaaacgatattttttggc |
214 |
Q |
| |
|
|||| ||||||||||| | |||| ||||||||||||||||||||| |
|
|
| T |
1163779 |
ctttgacacgagcaactatggcattagctaaacgatattttttggc |
1163824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 70 - 214
Target Start/End: Complemental strand, 1850059 - 1849912
Alignment:
| Q |
70 |
ctcctccagacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtg---tcattatttccagt |
166 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| | |||||||||| | |
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|
| T |
1850059 |
ctccttcaggcaggtcataaccaagagcatggtcaccaggttttaaaatacgactaagatgagtcctgatttgaaaagttgtgtgattattatttccaat |
1849960 |
T |
|
| Q |
167 |
atctttcacacgagcaaccacagcatcagctaaacgatattttttggc |
214 |
Q |
| |
|
|||||||||||||||||| | |||| ||||||||||||||||||||| |
|
|
| T |
1849959 |
atctttcacacgagcaactatggcattagctaaacgatattttttggc |
1849912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 185
Target Start/End: Original strand, 40102213 - 40102315
Alignment:
| Q |
83 |
gtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtgtcattatttccagtatctttcacacgagca |
182 |
Q |
| |
|
||||||||||| |||||||||||| ||| |||| | ||| ||||||||| |||| | ||| | |||||||| |||||| |||||||||||||||| |
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|
| T |
40102213 |
gtcataaccaaaagcatggtcaccaaatttcaaaagataacccagatgagtcttgatattaaatctcgtgtcattctttccaaaatctttcacacgagca |
40102312 |
T |
|
| Q |
183 |
acc |
185 |
Q |
| |
|
||| |
|
|
| T |
40102313 |
acc |
40102315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 151; Significance: 6e-80; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 22 - 214
Target Start/End: Original strand, 25912240 - 25912429
Alignment:
| Q |
22 |
cagcaggaaggttgttattggtgttggtgtcagctcctccttctcctactcctccagacaggtcataaccaagagcatggtcaccgggttttaaaatacg |
121 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||| |||||| |
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|
| T |
25912240 |
cagcatgaaggttgttattggtgttggtgttagctcctccttctcct---cctctagacaggtcataaccaagagcatggtcatcgggttttagaatacg |
25912336 |
T |
|
| Q |
122 |
accaagatgagtcctgatttgaaaagttgtgtcattatttccagtatctttcacacgagcaaccacagcatcagctaaacgatattttttggc |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
25912337 |
accaagatgagtcctgatttgaaaagttgtgtcattatttccaatatctttcacacgagcaaccacatcatcagctaaacgatattttttggc |
25912429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 44444772 - 44444838
Alignment:
| Q |
83 |
gtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagtt |
149 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
44444772 |
gtcataaccaagagcatagtcaccaggttttaaaatacgaccaagatgagtcttgatttgaaaagtt |
44444838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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