View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20968_low_16 (Length: 287)
Name: NF20968_low_16
Description: NF20968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20968_low_16 |
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| [»] scaffold0643 (2 HSPs) |
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Alignment Details
Target: scaffold0643 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: scaffold0643
Description:
Target: scaffold0643; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 5078 - 4873
Alignment:
| Q |
1 |
ttaaataactaaatttataaaagaaactcttatgatttctttaaaagaaaaaactcttagtatgaataattagatgccatacgttaataaaattacatta |
100 |
Q |
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| T |
5078 |
ttaaataactaaatttataaaagaaactcttatgatttctttaaaagaaataactcttaatatgaataattaaatgccatacgttaataaaattacatta |
4979 |
T |
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| Q |
101 |
attatcagtttttaaccgatgttgtatgtgaccggtttt--tatcggttttgagagaaaccaactactgatttaaaaattaaatgtcattcaatatggtt |
198 |
Q |
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| T |
4978 |
attatcagtttttaaccgatgttgtatgtgaccagtttttatatcagttttgagagaaaccaactactgatttaaaaattaaatgtcattcaatttgatt |
4879 |
T |
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| Q |
199 |
ggtctg |
204 |
Q |
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|||||| |
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| T |
4878 |
ggtctg |
4873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0643; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 200 - 283
Target Start/End: Complemental strand, 1469 - 1387
Alignment:
| Q |
200 |
gtctggcttgttatttatccaaaaacataaataatcaaatccaatgcaattcaatttaagtgcagttgaatggaacctatgcta |
283 |
Q |
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| T |
1469 |
gtctggattgttatttatccaaaaacataaataatcaaatccaatgcaattcaa-ttaagtgcagttgaatggaacctatgcta |
1387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 104; Significance: 7e-52; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 50 - 201
Target Start/End: Complemental strand, 15831281 - 15831130
Alignment:
| Q |
50 |
aaaactcttagtatgaataattagatgccatacgttaataaaattacattaattatcagtttttaaccgatgttgtatgtgaccggtttttatcggtttt |
149 |
Q |
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| T |
15831281 |
aaaactcttaagatgaatatttaaatgttatacgttaataaaattacattaactgtcaatttttaaccgatgttgtatgtgaccagtttttatcggtttt |
15831182 |
T |
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| Q |
150 |
gagagaaaccaactactgatttaaaaattaaatgtcattcaatatggttggt |
201 |
Q |
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| T |
15831181 |
gagagaaaccaactactgatttaaaaattaaatgtcattcaatttagttggt |
15831130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 51 - 201
Target Start/End: Complemental strand, 15818230 - 15818080
Alignment:
| Q |
51 |
aaactcttagtatgaataattagatgccatacgttaataaaattacattaattatcagtttttaaccgatgttgtatgtgaccggtttttatcggttttg |
150 |
Q |
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||||||||| || |||| ||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
15818230 |
aaactcttaagattaatatttaaatgctatacgttaataaaattacattaattatcagtttttatccgatgttgtatgtgaccagtttttatcggttttg |
15818131 |
T |
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| Q |
151 |
agagaaaccaactactgatttaaaaattaaatgtcattcaatatggttggt |
201 |
Q |
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||||||| |||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
15818130 |
agagaaatcaactattgatttaaaaattaaatgtcattcaattgggttggt |
15818080 |
T |
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