View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20968_low_17 (Length: 285)
Name: NF20968_low_17
Description: NF20968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20968_low_17 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 16845182 - 16845466
Alignment:
| Q |
1 |
actttaaactttcattctgattcaggtcacgaagccaatttcagttccaatcatgagaatttccttcagtgattcttttctgcgctactgaaatgttctt |
100 |
Q |
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| T |
16845182 |
actttaaacgttcattctgattcaggtcacgaagccaattccagttccaatcatgagaatttccttcagtgattcttttctgcgctactgaaatgttctt |
16845281 |
T |
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| Q |
101 |
atcagtacaagcaatttcttctactaaatcagtatattaaatggcacactataaacgtattttccccactttctacatttcttctaattgtatttttaaa |
200 |
Q |
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| T |
16845282 |
atcagtacaagcaatttcttcaactaaatcagtatattaaatggcacactataaacgtattttccccactttctacatttcttctaattgtatttctaaa |
16845381 |
T |
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| Q |
201 |
ccagtttgattcaccttaaaaatcccttccaattgttcataaatctcgccactaaataaatctatccttcaacctctttcgcctt |
285 |
Q |
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| T |
16845382 |
ccagtttgattcaccttaaaaatcccttccaattgttcataaatctcgccactaaataagtctatccttcaacctctttcacctt |
16845466 |
T |
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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 3866757 - 3866666
Alignment:
| Q |
11 |
ttcattctgattcaggtcacgaagccaatttcagttccaatcatgagaatttccttcagtgattcttttctgcgctactgaaatgttcttat |
102 |
Q |
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| T |
3866757 |
ttcattctgattcaggtcgtgaagccaattctagttccaatcatgagatcttccatcacagattcttttctgcgctattgaaacgttcttat |
3866666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 3866591 - 3866519
Alignment:
| Q |
161 |
tttccccactttctacatttcttctaattgtatttttaaaccag---tttgattcaccttaaaaatcccttcc |
230 |
Q |
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| T |
3866591 |
tttccccacttcctacatttcttctaatcgtaattctaaaccagttttttgattcaccttcaaaatcccttcc |
3866519 |
T |
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