View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20968_low_18 (Length: 269)
Name: NF20968_low_18
Description: NF20968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20968_low_18 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 53 - 269
Target Start/End: Original strand, 1091323 - 1091539
Alignment:
| Q |
53 |
ttgagcaacatgtcttttttctaaaattctacggctattttaaaacataaaaaatatagaacctaagtgaccaaatgactcattaattgagtacaagcat |
152 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1091323 |
ttgagcaacatgtcttttttctaaaattctacggcttttttaaaacataaaaaatatagaacctaagtgaccaaatgactcattaattgagtacaagcat |
1091422 |
T |
|
| Q |
153 |
aataagatccaacatttaattctcaatacatgccaaatcataactttaatctacaaataagatcaataattctcaagcgaagatacaaaaataacaataa |
252 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1091423 |
aataagatgcaacatttaattctcaatacatgccaaatcataacttcaatctacaaataagatcaataattctcaagcgaagatacaaaaataacaataa |
1091522 |
T |
|
| Q |
253 |
caataacaaaataggct |
269 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
1091523 |
caataacaaaataggct |
1091539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 56 - 255
Target Start/End: Original strand, 36523952 - 36524144
Alignment:
| Q |
56 |
agcaacatgtcttttttctaaaattctacggctattttaaaacataaaaaatatagaacctaagtgaccaaatgactcattaattgagtacaagcataat |
155 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36523952 |
agcaacatgtcttttttctaaaattctacggct-ttttaaaa------aaatatagaacctaagtgaccaaatgactcattaattgagtacaagcataat |
36524044 |
T |
|
| Q |
156 |
aagatccaacatttaattctcaatacatgccaaatcataactttaatctacaaataagatcaataattctcaagcgaagatacaaaaataacaataacaa |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
36524045 |
aagatccaacatttaattctcaatacatgccaaatcagaacttcaatcaacaaataagataaataattctcaaccgaagatacaaaaataacaataacaa |
36524144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 127 - 254
Target Start/End: Complemental strand, 12820938 - 12820811
Alignment:
| Q |
127 |
atgactcattaattgagtacaagcataataagatccaacatttaattctcaatacatgccaaatcataactttaatctacaaataagatcaataattctc |
226 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||| |||||||| | |||||||||||||||||||||| |
|
|
| T |
12820938 |
atgactcattaattgagcacaaacataataagatccaacatttaattctcaatacataccaaatcagaactttaaccaacaaataagatcaataattctc |
12820839 |
T |
|
| Q |
227 |
aagcgaagatacaaaaataacaataaca |
254 |
Q |
| |
|
|| ||||||||||| | ||||||||||| |
|
|
| T |
12820838 |
aaacgaagatacaagagtaacaataaca |
12820811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 5e-40; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 53 - 177
Target Start/End: Original strand, 18099999 - 18100125
Alignment:
| Q |
53 |
ttgagcaacatgtcttttttctaaaattctacggctattttaaaacata--aaaaatatagaacctaagtgaccaaatgactcattaattgagtacaagc |
150 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||| || ||||||||| ||||||||| ||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
18099999 |
ttgaggaacatgtcttttttctaaaattatacggcttttataaaacatataaaaaatataaaacctaagtgaccaaataactcatgaattgagtacaagc |
18100098 |
T |
|
| Q |
151 |
ataataagatccaacatttaattctca |
177 |
Q |
| |
|
|||||||||||||||||| |||||||| |
|
|
| T |
18100099 |
ataataagatccaacattcaattctca |
18100125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 53 - 177
Target Start/End: Original strand, 18095702 - 18095828
Alignment:
| Q |
53 |
ttgagcaacatgtcttttttctaaaattctacggctattttaaaacata--aaaaatatagaacctaagtgaccaaatgactcattaattgagtacaagc |
150 |
Q |
| |
|
||||| |||||||||||||||||||||| |||| || || ||||||||| ||||||||| ||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
18095702 |
ttgaggaacatgtcttttttctaaaattatacgacttttataaaacatataaaaaatataaaacctaagtgaccaaataactcatgaattgagtacaagc |
18095801 |
T |
|
| Q |
151 |
ataataagatccaacatttaattctca |
177 |
Q |
| |
|
|||||||||||||||||| |||||||| |
|
|
| T |
18095802 |
ataataagatccaacattcaattctca |
18095828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 18095841 - 18095891
Alignment:
| Q |
205 |
acaaataagatcaataattctcaagcgaagatacaaaaataacaataacaa |
255 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
18095841 |
acaaataagatcaataattctcagccgaagatacaaaaataacaataacaa |
18095891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 18100138 - 18100188
Alignment:
| Q |
205 |
acaaataagatcaataattctcaagcgaagatacaaaaataacaataacaa |
255 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
18100138 |
acaaataagatcaataattctcagccgaagatacaaaaataacaataacaa |
18100188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 109 - 252
Target Start/End: Complemental strand, 7709089 - 7708941
Alignment:
| Q |
109 |
tagaacctaagtgaccaaatgactcattaa-ttgagtacaagcataataagatccaacatttaattctcaatacatgccaaatcataactttaatctac- |
206 |
Q |
| |
|
|||||||||| ||||||||| ||||||||| |||||| || | |||| ||||||||||| ||| |||||||| || ||||||||||||||||| || |
|
|
| T |
7709089 |
tagaacctaactgaccaaataactcattaaattgagttcatgtctaattagatccaacatgtaactctcaatatatatcaaatcataactttaataaaca |
7708990 |
T |
|
| Q |
207 |
---aaataagatcaataattctcaagcgaagatacaaaaataacaataa |
252 |
Q |
| |
|
|||| || |||||||||||||| | ||||||| ||||||||||||| |
|
|
| T |
7708989 |
gataaattagttcaataattctcaaacaaagatacgaaaataacaataa |
7708941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University