View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20968_low_21 (Length: 253)
Name: NF20968_low_21
Description: NF20968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20968_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 32666958 - 32666705
Alignment:
| Q |
1 |
attgagttagggtatgggaaggatgggcgaaagtgtagtcacagatatcaaaattgaaagaatgatgggacaaaatctatgtacacaagtgattttgg-- |
98 |
Q |
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| T |
32666958 |
attgagttagggtatgggaaggatgggcaaaagtgtagtcacagatatcaaaattgaaagaatgatgggacaaaatctatgtacacaagtgatttttgtg |
32666859 |
T |
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| Q |
99 |
-----tgtagaaccttgtaagagtggtttttaccattagatgtt------------agaacacacacttagagatatgagaaggttctcatgcgagttat |
181 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| | |
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| T |
32666858 |
tagattgtagaaccttgtaagagtggtttttaccattagatgttagaacacaattgagaacacacacttagagagatgagaaggttctcatgcgagt--t |
32666761 |
T |
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| Q |
182 |
aacaagaaagtgcacactatgacactaatgagttttattatcggcatcacacataa |
237 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32666760 |
aacaagaaagtgcacactatgacactaatgagttttattatcagcatcacacataa |
32666705 |
T |
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