View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20968_low_23 (Length: 250)
Name: NF20968_low_23
Description: NF20968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20968_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 53639634 - 53639399
Alignment:
| Q |
1 |
tcaaaaaatgattgagagtagttttacaaaatccacacacagtattgacttttttatgtgagttaaatattacagactatatccattatatagtattggt |
100 |
Q |
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| T |
53639634 |
tcaaaaaatgattgagagtagttttacaaaatccacacacagtattgacttttttatgtgagttaaatattacagactatatccattatatagtattggt |
53639535 |
T |
|
| Q |
101 |
aaaaagatgatcattaatgtgtctgtttgtccatttttatgttgcacttaacgaaacttgtcaaataaaattaaaataagttgtttttataatgtccaaa |
200 |
Q |
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| T |
53639534 |
aaaaagatgatcattaatgtgtctgtttgtccatttttatgttgcacttaacgaaacttgtcaaataaaattaaaataagttgtttttataatgtccaat |
53639435 |
T |
|
| Q |
201 |
agcgttctattgtattgttatttttactattgcagt |
236 |
Q |
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||||||||||||||||||||||||| |||||||||| |
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| T |
53639434 |
agcgttctattgtattgttattttttctattgcagt |
53639399 |
T |
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